Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGTATGCAAATGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAGgttaggttttttgttgtgccgctctttctgatcacaatgttcagcacagatttaacatttttgttcattctaattaccagcttatgtggtttcatcatattacgtacatgcag

Basic information

species Oryza sativa
transcript LOC_Os04g54474.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58667915|gb|CK056601.1|CK056601
EST:     TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAG                         GTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
genomic: TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAGgttaggtttt ... gtacatgcagGTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
EST: gi|38473305|gb|CF957437.1|CF957437
EST:     TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAG                         GTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
genomic: TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAGgttaggtttt ... gtacatgcagGTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
EST: gi|29642525|gb|CB647532.1|CB647532
EST:     TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAG                         GTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
genomic: TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAGgttaggtttt ... gtacatgcagGTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
EST: gi|29640853|gb|CB645860.1|CB645860
EST:     TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAG                         GTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
genomic: TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAGgttaggtttt ... gtacatgcagGTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
EST: gi|29659308|gb|CB655583.1|CB655583
EST:     TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAG                         GTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC
genomic: TGGGAGCCTTCGAGAACCAAATCTTGGATTTACAGGACCGATCGATCCAGgttaggtttt ... gtacatgcagGTGCCTTAGGTTTTGAGATTAAGTACAGCCATTGGGTGGACGAGCAGAATC