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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGTACGCGGCAGTGTTCTCGAACATCGTGTCGAGGGCCATCACGCTGGAGGTGCTGTCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTGgtatgtgttcatgcttgtcttaaaaattttgtctcctttctgaatcttctgtcatattcggtagtaccaaagaattcgaagtgtgtacatgttggtcactgaaatgggacaaaattgtgttggttttggccgttttctctgcag

Basic information

species Oryza sativa
transcript LOC_Os04g53540.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673531|gb|CK062217.1|CK062217
EST:     AGGTGCTGTCCACCGGCGTCGCGGGGAATTACAACGGTGCATTGCAAGTG                         ATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
genomic: AGGTGCTGTCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTGgtatgtgttc ... ttctctgcagATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
EST: gi|29687447|gb|CB683722.1|CB683722
EST:     AGGTGCTGTCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTG                         ATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
genomic: AGGTGCTGTCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTGgtatgtgttc ... ttctctgcagATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
EST: gi|58665579|gb|CK054265.1|CK054265
EST:     AGGTGCTGTCCACCGGCGTCGCGGGGAATTACAACGGTGCATTGCAAGTG                         ATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
genomic: AGGTGCTGTCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTGgtatgtgttc ... ttctctgcagATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
EST: gi|29620266|gb|CB625278.1|CB625278
EST:     AGGTGCTGTCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTG                         ATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
genomic: AGGTGCTGTCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTGgtatgtgttc ... ttctctgcagATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
EST: gi|58611333|gb|CK039045.1|CK039045
EST:     TCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTG                         ATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC
genomic: TCCACCGGCGTCGCGGGGAACTACAACGGTGCATTGCAAGTGgtatgtgttc ... ttctctgcagATGTCAGTGGAGTTTCAGGTGCCATCGCCACTGGTGCCAACGAGAGAGAGC