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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTCAAGTGCAGATAATGGAGAAAGTAAAAAAGATTCTAATTCACGGGCATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTgtaagatttttgctagggtgccctttgctgactttttttcgttaaagaatcttcatggtagttattacaagcctttctgctggaccacttcttttacata...

Basic information

species Oryza sativa
transcript LOC_Os04g48820.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8956159|gb|BE229963.1|BE229963
EST:     CATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATT                         GGTATGAAGTATGTCGCCTCACTGCTTGAAATATCA
genomic: CATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTgtaagatttt ... tttgtctcagGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCA
EST: gi|8956451|gb|BE230254.1|BE230254
EST:     CATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATT                         GTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCT
genomic: CATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTgtaagatttt ... tttgtctcagGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCT
EST: gi|8956439|gb|BE230242.1|BE230242
EST:     CATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATT                         GTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCT
genomic: CATCTACCACTTCAAATGAGTCTTTGAACCATCCATCTAATATCCACATTgtaagatttt ... tttgtctcagGTTATGAAGTATGTCGCCTCACTGCTTGAAATATCAGAAATAGAACTTGCT