1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCATGCACTACAGTTCACAGATCCAATTCTTAAGATGGGCGAAATGCTTGTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAGgttttgtttcttgcctaaattttgtgtttttatatagtatgcatggcacaaactctgttaatccacacatgctgtgacag
species | Oryza sativa |
transcript | LOC_Os04g47520.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCCANNGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAG ATTTGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGAEST: gi|58668971|gb|CK057657.1|CK057657
genomic: GTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAGgttttgtttc ... gctgtgacagATTTGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGA
EST: GTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAG ATTTGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGAEST: gi|4879575|gb|AU063874.1|AU063874
genomic: GTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAGgttttgtttc ... gctgtgacagATTTGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGA
EST: GTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAG ATTTGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGAEST: gi|58655499|gb|CK044179.1|CK044179
genomic: GTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAGgttttgtttc ... gctgtgacagATTTGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGA
EST: GTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAG ATTTGAGCCTGACATGCTCGCCGGCTCTGGTTGCTACTTTGGAGGTGGGGA
genomic: GTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAGgttttgtttc ... gctgtgacagATTTGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATGCACTACAGTTCACAGATCCAATTCTTAAGATGGGCGAAATGCTTGTCCAAAGAATGAGAGCCAAAAGTGGACGCTTCATTGCCCTTCACCTAAGgttttgtttcttgcctaaattttgtgtttttatatagtatgcatggcacaaactctgttaatccacacatgctgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA