1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTTTAACTGAGGCATTGTGTGGGTTCCAATTCATCCTCACTCATCTGGACAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatccccttaaaatgctagcctttttgtttgccacttcgtaattctgttttttctattcagattctaatcagttgcagacttttttaaagaattaactcaaatattttccaaacag
species | Oryza sativa |
transcript | LOC_Os04g46390.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|88988719|gb|CI039138.1|CI039138
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGACAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|3762040|gb|C99288.1|C99288
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAANCCTG GTCAACACAAGGCCAT-AATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|8858764|gb|AU096082.1|AU096082
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|86261580|gb|CI017322.1|CI017322
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: GAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29678522|gb|CB674797.1|CB674797
genomic: GAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29640000|gb|CB645009.1|CB645009
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|218481590|gb|FG960931.1|FG960931
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: GCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG TTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGNCCGGCCTTEST: gi|109712005|gb|CI029175.1|CI029175
genomic: GCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29644138|gb|CB649145.1|CB649145
genomic: CTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29643237|gb|CB648244.1|CB648244
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|89192792|gb|CI050090.1|CI050090
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: TTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29663532|gb|CB659807.1|CB659807
genomic: TTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|86901901|gb|CI298548.1|CI298548
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29643292|gb|CB648299.1|CB648299
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29637041|gb|CB642050.1|CB642050
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|27577316|gb|CB000011.1|CB000011
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|8858763|gb|AU096081.1|AU096081
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: GTNGGCAGCTCCCTAAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29670817|gb|CB667092.1|CB667092
genomic: GTAGGCAGCT-CCT-AATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29614043|gb|CB619056.1|CB619056
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCAGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|218494336|gb|FG947221.1|FG947221
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCAGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29685950|gb|CB682225.1|CB682225
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|15852528|gb|BI805324.1|BI805324
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCT-GCGAAATTATTAAACCTG GTCAACACAA-GCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29668765|gb|CB665040.1|CB665040
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACCCCATGGCCGGCCTTEST: gi|88979252|gb|CI025754.1|CI025754
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: TATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29678573|gb|CB674848.1|CB674848
genomic: TATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|218503695|gb|FG958495.1|FG958495
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGEST: gi|29645125|gb|CB650132.1|CB650132
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCG
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29670818|gb|CB667093.1|CB667093
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|218499562|gb|FG954739.1|FG954739
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|29683516|gb|CB679791.1|CB679791
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|89188868|gb|CI048604.1|CI048604
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: AATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|8528315|gb|AU093130.1|AU093130
genomic: AATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: AGTAGGCAGCTCCTAATCAAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATNAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|86903742|gb|CI300596.1|CI300596
genomic: AGTAGGCAGCTCCTAATC-AAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|88901709|gb|CI001817.1|CI001817
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: ATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|218492135|gb|FG957408.1|FG957408
genomic: ATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|58684853|gb|CK073540.1|CK073540
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|700654|gb|D46945.1|D46945
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGGATGCCACACCATGGCCGGCCTTEST: gi|38476212|gb|CF960345.1|CF960345
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCAGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCEST: gi|29644137|gb|CB649144.1|CB649144
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCC
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|38479739|gb|CF963828.1|CF963828
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTTEST: gi|25798325|gb|CA754286.1|CA754286
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
EST: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTG GTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
genomic: CAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatc ... ttccaaacagGTCAACACAAGGCCATAAATGATGAGGGAATGCCACACCATGGCCGGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTAACTGAGGCATTGTGTGGGTTCCAATTCATCCTCACTCATCTGGACAGTAGGCAGCTCCTAATCAAGGCAAATCCTGGCGAAATTATTAAACCTGgtatctcatccccttaaaatgctagcctttttgtttgccacttcgtaattctgttttttctattcagattctaatcagttgcagacttttttaaagaattaactcaaatattttccaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC