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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCTGGAGCTCCACCTTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctctatagttttaattctgttacatttgtgatactgcttgggatatgcatatgcataaatgatgcagacaggggatttgacatattcgggtggaattaattctattccatcag

Basic information

species Oryza sativa
transcript LOC_Os04g38480.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G870959_T01 (Zea mays), 5'ss of exon 7
AAAGATCTTTGTGGCCCGGGTACTACAAAACCCTGCCCTGGAGCTCCACCTTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctctatagtttta-attctgttacatttgtgatactgcttgggatatgcatatgcataaa----tgatgcagacag-----gggatttgacatattcgggtggaattaattctattccatcag-----
  | ||||||| ||||| ||||||||||| || || ||||| ||||| || ||||||||||| ||||| | |||||||||| |||| |||   ||| ||||| |   |   | | | || |||| || | |    || |||||  || |||||||||| |    ||    ||   |   ||      || |  |||||||| | |   |  |||||||| |||  |        
CCAAATCTTTGCGGCCCTGGTACTACAAAGCCTTGTCCTGGGGCTCCTCCATTTTCTCCACCCCCTCCATACAATCCCCCAGCACCAACTTCATCAAAAGgt-acggtgattggctgtatattccgtcatacc-atgctactgtatgtgatatgcataagagcgaagcactggcacgatcaaactctggtacatgacatatcctgactgggttaattctgttctgttccctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|44670533|gb|CR283967.1|CR283967
EST:     TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTATCACAAG                         GTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
genomic: TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctct ... attccatcagGTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
EST: gi|29614687|gb|CB619700.1|CB619700
EST:     TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAG                         GTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
genomic: TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctct ... attccatcagGTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
EST: gi|29633283|gb|CB638292.1|CB638292
EST:     TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAG                         GGTGACTCCAAAACTGGAGCAATTGGCTGGAGGTGTTGCTGCAGCTGCTGC
genomic: TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctct ... attccatcagG-TGACTCCAAAACTGGAGCAATTG-CTGGAGGTGTTGCTGCAGCTGCTGC
EST: gi|58688409|gb|CK077096.1|CK077096
EST:     TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTATCACAAG                         GTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
genomic: TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctct ... attccatcagGTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
EST: gi|13904809|gb|BF889447.1|BF889447
EST:     TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAG                         GTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
genomic: TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctct ... attccatcagGTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
EST: gi|66932184|gb|CX119032.1|CX119032
EST:     TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTATCACAAG                         GTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
genomic: TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctct ... attccatcagGTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
EST: gi|58665168|gb|CK053854.1|CK053854
EST:     TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAG                         GTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT
genomic: TTTTTCTCCACCACCTCCTTTCAATCCCCCAACACCTACTGTGTCACAAGgtgattctct ... attccatcagGTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCAT