1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAACAGTGTGGTGGGCATACGCTCCACAATCAGCAAGTTATCCCAGCTCCTGAAAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAGgtatgcatttcaataacttttttcttgttacatttttacagtgtatttctgctcctactctaatgctttgtatattccag
species | Oryza sativa |
transcript | LOC_Os04g30880.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGAAAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAG GTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAGEST: gi|27546849|gb|CA767268.2|CA767268
genomic: TGAAAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAGgtatgcattt ... tatattccagGTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAG
EST: TGAAAAGGCACGATGAAGAGCTATGGCGGCATTTAGAGGTTGTGACCAAG GTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAGEST: gi|29626498|gb|CB631509.1|CB631509
genomic: TGAAAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAGgtatgcattt ... tatattccagGTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAG
EST: TGAAAAGGCACGATGAAGAGCTATGGCGGCATTTAGAGGTTGTGACCAAG GTTAATCCACAGTTTTACGCATTCCGATGGATCACCTTGCTATTGACGCAGEST: gi|88510509|gb|CI438015.1|CI438015
genomic: TGAAAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAGgtatgcattt ... tatattccagGTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAG
EST: AAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAG GTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAGEST: gi|86494334|gb|CI136967.1|CI136967
genomic: AAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAGgtatgcattt ... tatattccagGTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAG
EST: TGAAAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAG GTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAGEST: gi|88505436|gb|CI432942.1|CI432942
genomic: TGAAAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAGgtatgcattt ... tatattccagGTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAG
EST: TGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAG GTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAG
genomic: TGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAGgtatgcattt ... tatattccagGTTAATCCACAGTTTTACGCATTCAGATGGATCACCTTGCTATTGACGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAGTGTGGTGGGCATACGCTCCACAATCAGCAAGTTATCCCAGCTCCTGAAAAGGCACGATGAAGAGCTCTGGCGGCATTTAGAGGTTGTGACCAAGgtatgcatttcaataacttttttcttgttacatttttacagtgtatttctgctcctactctaatgctttgtatattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT