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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGCCTTATTGAAGGGGATACTAGTTCTGTTTGGCATGTTGCAAAAGCTATCCATAAGTTAGAGgtatgtgtcttcctttcatgtattttggcatttaccttttccattctttttacttgtttttactaaggttgtaatggtactctcgcaagtcgtagcaagt...

Basic information

species Oryza sativa
transcript LOC_Os04g14654.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g14654.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G003734_T01 (Zea mays), 5'ss of exon 7
GAATGCCTTATTGAAGGGGATACTAGTTCTGTTTGGCATGTTGCAAAAGCTATCCATAAGTTAGAGgtatgtgtcttcctttcatgtattttggcatttaccttttccattcttt--ttacttgtttttactaaggttgtaatggtactctcgcaagtcgt--agcaagt-----
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GAATGCCTTATTGAAGGAGATACAAGTTCTATCTGGCATGTTGCTAAAGCGATCCATAAATTAGAGgtatttatgt--cttccttgtac-----cagtggcctgtttggatttttggtgacctggggctcgctggatggtgttgg--ctggcccaggccatcaaccaaataggct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29641506|gb|CB646513.1|CB646513
EST:     GGGATACTAGTTCTGTTTGGCATGTTGCAAAAGCTATCCATAAGTTAGAG                         TTTGCCTTTGGAGTAATTCCCAATGTTCGGGCCAAGGGTGTTGCATCCACC
genomic: GGGATACTAGTTCTGTTTGGCATGTTGCAAAAGCTATCCATAAGTTAGAGgtatgtgtct ... ctttccccagTTTGCCTTTGGAGTAATTCCCAATGTTCGGGCCAAGGGTGTTGCATCCACC