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GCCAACTAGTGAATTCCCCCATCCTCTTTCTCGTGTGAAACAAGCGGCTGGATATCGAgtgagtttgcatcttacatatttattcaggaaatattttaaacttcttctcttagacacatttgttatagttgctcaatgattaaattaaccctaccggc...
species | Oryza sativa |
transcript | LOC_Os04g04254.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGAATTCCCCCATCCTCTTTCTCGTGTGAAACAAGCGGCTGGATATCGA CTTTCTTATCAAATTGTTGACTCTATGATTTGGCTTGGTATCCGAGATATGEST: gi|42793914|gb|AB117813.1|AB117813
genomic: GTGAATTCCCCCATCCTCTTTCTCGTGTGAAACAAGCGGCTGGATATCGAgtgagtttgc ... acacttgcagCTTTCTTATCAAATTGTTGACTCTATGATTTGGCTTGGTATCCGAGATATG
EST: GTGAATTCCCCCATCCTCTTTCTCGTGTGAAACAAGCGGCTGGATATCGA CTTTCTTATCAAATTGTTGACTCTATGATTTGGCTTGGTATCCGAGATATGEST: gi|58670931|gb|CK059617.1|CK059617
genomic: GTGAATTCCCCCATCCTCTTTCTCGTGTGAAACAAGCGGCTGGATATCGAgtgagtttgc ... acacttgcagCTTTCTTATCAAATTGTTGACTCTATGATTTGGCTTGGTATCCGAGATATG
EST: GTGAATTCCCCCATCCTCTTTCTCGTGTGAAACAAGCGGCTGGATATCGA CTTTCTTATCAAATTGTTGACTCTATGATTTGGCTTGGTATCCGAGATATG
genomic: GTGAATTCCCCCATCCTCTTTCTCGTGTGAAACAAGCGGCTGGATATCGAgtgagtttgc ... acacttgcagCTTTCTTATCAAATTGTTGACTCTATGATTTGGCTTGGTATCCGAGATATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAACTAGTGAATTCCCCCATCCTCTTTCTCGTGTGAAACAAGCGGCTGGATATCGAgtgagtttgcatcttacatatttattcaggaaatattttaaacttcttctcttagacacatttgttatagttgctcaatgattaaattaaccctaccggc
- - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctacc