1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTATTACTCGCACAACAATGATTACCTGGAAATCTGCCGTTGCTACAAGTCGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctctctcattcgcaagtcttacttggtgtggtgtgtgcgcatactcactcacgctataatggttatctgactgcctgaattcgctttag
species | Oryza sativa |
transcript | LOC_Os03g63430.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATGEST: gi|29664786|gb|CB661061.1|CB661061
genomic: ATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATGEST: gi|29639942|gb|CB644951.1|CB644951
genomic: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATGEST: gi|4715022|gb|AU056139.1|AU056139
genomic: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATGEST: gi|29645308|gb|CB650315.1|CB650315
genomic: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATGEST: gi|29658197|gb|CB654472.1|CB654472
genomic: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: ATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATGEST: gi|29664785|gb|CB661060.1|CB661060
genomic: ATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: GATTTATGAAATTCCATNCA-TAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGEST: gi|33797492|gb|CF324606.1|CF324606
genomic: GATTTATGAAATTCCAT-CAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCG
EST: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATGEST: gi|300215653|gb|HO088279.1|HO088279
genomic: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCAGATGEST: gi|117217926|gb|CT845200.1|CT845200
genomic: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGC-TCATGATCCGATGEST: gi|29637545|gb|CB642554.1|CB642554
genomic: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATGEST: gi|29620777|gb|CB625788.1|CB625788
genomic: CGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
EST: GATCCATCAAAGTGGATACCG GTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
genomic: GATCCATCAAAGTGGATACCGgtaaagctct ... ttcgctttagGTTCTTAGAAAGATCTGTTGGTATTTGGTGTTGGCGCCTCATGATCCGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTACTCGCACAACAATGATTACCTGGAAATCTGCCGTTGCTACAAGTCGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctctctcattcgcaagtcttacttggtgtggtgtgtgcgcatactcactcacgctataatggttatctgactgcctgaattcgctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA