1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaaatgttttccttggctttcccatttgctacagtttgtgactttatactcatatcacatattctgatttgtgctgtag
species | Oryza sativa |
transcript | LOC_Os03g63090.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|218494510|gb|FG957958.1|FG957958
genomic: GCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|87033364|gb|CI187988.1|CI187988
genomic: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GGCATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|87036117|gb|CI189564.1|CI189564
genomic: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GGCATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|58652450|gb|CK041130.1|CK041130
genomic: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: GCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|218502090|gb|FG953891.1|FG953891
genomic: GCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|38477980|gb|CF962113.1|CF962113
genomic: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|88969036|gb|CI099025.1|CI099025
genomic: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: TAGATTTCATTGTTCAGTTTATGGAG GACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|33683667|gb|CF311906.1|CF311906
genomic: TAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: AAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGTEST: gi|86490261|gb|CI132894.1|CI132894
genomic: AAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
EST: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAG GACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
genomic: AGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaa ... tgtgctgtagGACATCGACAAGGAGATCAGTGAGCTAAAGCTTTCGGTAAATACACGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTATGATATCAGTTTCCTGATAACAAACTACCACTGTGAGGACATGCACAAGCATAAGCTCATAGATTTCATTGTTCAGTTTATGGAGgtaaggaaaaatgttttccttggctttcccatttgctacagtttgtgactttatactcatatcacatattctgatttgtgctgtag
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