1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacatctgacagtatctggcagacaaataccccaacagcaacaaaatgtaccatttgtctgaaatgctttctctctgaattccttctgcag
species | Oryza sativa |
transcript | LOC_Os03g58040.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|58680379|gb|CK069066.1|CK069066
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|163920099|gb|EG712029.1|EG712029
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: GCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|286451|gb|D15259.1|D15259
genomic: GCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|86823598|gb|CI258678.1|CI258678
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|29674432|gb|CB670707.1|CB670707
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGGCTGCAACCCTCCCCACAGCCCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTATCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|86594959|gb|CI258213.1|CI258213
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|8527504|gb|AU092319.1|AU092319
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGNCTGNAAACCACCCCACAGACCNTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|58593842|gb|CF992150.1|CF992150
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGGCTGCAAGCCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|3760756|gb|C98010.1|C98010
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: GTACATCATTGA-GCTTGCAAACCACCCAACAGA-CCTGAGGCAGATGA- ATCCTGTCCAAGAAA-GCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|86594966|gb|CI258220.1|CI258220
genomic: GTACATCATTGAGGC-TGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCCEST: gi|29679311|gb|CB675586.1|CB675586
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
EST: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAG ATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
genomic: AGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacat ... ccttctgcagATCCTGTCCAAGAAAGGCGTTCTCATTCTTCCAGACATCCTCGCGAACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacatctgacagtatctggcagacaaataccccaacagcaacaaaatgtaccatttgtctgaaatgctttctctctgaattccttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG