1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATCAGCGTGCCCGTTACCATTTGATGAAGCAAAACTCTGGCAAGGTGAAAATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttcatgttattcatgttttcagttcataatatgcacttgtctgattcaaaatcatatccttggaatgttattttcacag
species | Oryza sativa |
transcript | LOC_Os03g52340.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCGATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|66920628|gb|CX107476.1|CX107476
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|86500373|gb|CI143006.1|CI143006
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|88378826|gb|CI681644.1|CI681644
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|33682548|gb|CF310787.1|CF310787
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTTGGATGTGAAGAAGTGTCGATTATGGGGGAAAEST: gi|29657857|gb|CB654132.1|CB654132
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTT-GGATGTGA-GAAGTGTCGATTATGGGG-AAA
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|29619060|gb|CB624072.1|CB624072
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCTEST: gi|27576175|gb|CA998869.1|CA998869
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
EST: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAG TGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
genomic: AATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttc ... attttcacagTGCAATTATGGATTGTGTTGGATGTGAGAAGTGTCGATTATGGGGAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCAGCGTGCCCGTTACCATTTGATGAAGCAAAACTCTGGCAAGGTGAAAATGGCCCTGAGCTAAAGCAGGAGATTCAGAAGCAATTTAGAAATATCAGgtgtgtgttcatgttattcatgttttcagttcataatatgcacttgtctgattcaaaatcatatccttggaatgttattttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA