1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGgtgagactagtctcaatagcaattttctttattaacgagatctgttataatataatccagcaccttcttttttgtacag
species | Oryza sativa |
transcript | LOC_Os03g49900.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATTTGTTTATAAATTATGG AATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCATEST: gi|29616594|gb|CB621606.1|CB621606
genomic: GATTTGTTTATAAATTATGGgtgagactag ... ttttgtacagAATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCAT
EST: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGG AATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCATEST: gi|29643978|gb|CB648985.1|CB648985
genomic: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGgtgagactag ... ttttgtacagAATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCAT
EST: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGG AATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCATEST: gi|29638900|gb|CB643909.1|CB643909
genomic: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGgtgagactag ... ttttgtacagAATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCAT
EST: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGG AATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCATEST: gi|157651756|gb|EX451390.1|EX451390
genomic: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGgtgagactag ... ttttgtacagAATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCAT
EST: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGG AATCGCGGAGTGTTTTGCATTTCTTGTTTGTACEST: gi|29658594|gb|CB654869.1|CB654869
genomic: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGgtgagactag ... ttttgtacagAATCGCGGAGTGTTTTGCATTTCTTGTTTGTAC
EST: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGG AATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCAT
genomic: GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGgtgagactag ... ttttgtacagAATCGCGGAGTGTTTTGCATTTCTTGTTTGTACTAGATGGTTTAATCCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATGTTGGTGCTTTGGGATGGTGGGATTTGTTTATAAATTATGGgtgagactagtctcaatagcaattttctttattaacgagatctgttataatataatccagcaccttcttttttgtacag
- - - - - - - - - - TGGTGG