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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaagttttttttttttcatgttgaagttaaaactaagcatagaatagtcccaaattttggattagcggtaagccaatcgcaggcaatgctttta...

Basic information

species Oryza sativa
transcript LOC_Os03g46740.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g46740.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G868168_T04 (Zea mays), 5'ss of exon 7
ATATGAAAATTCCAGCCTGCCTGAGGAGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaagttttttttttttcatgttgaagttaaaactaagcatagaatagtc--ccaaattttggattagcggtaagcca--atcgcaggcaatgctttta
|||||||||||| ||| | || |||||  | || | || | | ||||||||||| ||||| |||||||| ||||| |||||||||| ||   | ||    |    |    |   || | ||||   |   |   ||| | ||  | || | ||         || ||   | | ||    
ATATGAAAATTCAAGCTTACCCGAGGACCGCATTGGTAAATTGGTGACAGAAACTTTGGCTGCAGTAGGACTAAAGgtaagtcaagcttccatattcgtttaggtagagcacttctcaccataagcttagcattcaattgttaaagtatctgtgtttttttgtcacaatgagtact----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672683|gb|CK061369.1|CK061369
EST:     AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA                         GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: gi|58691671|gb|CK080358.1|CK080358
EST:     AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA                         GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: gi|29620621|gb|CB625632.1|CB625632
EST:     AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAGA                         GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: gi|226698432|gb|GO497010.1|GO497010
EST:     AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAA                         GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: gi|58593744|gb|CF992052.1|CF992052
EST:     AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA                         GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: gi|218486282|gb|FG952873.1|FG952873
EST:     AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA                         GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
EST: gi|27547660|gb|CA767399.2|CA767399
EST:     AGAGAATAGCTACGCTAGTGACAGAAACATTGGCCGCAGTAGGCCTTAAA                         GGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT
genomic: AGAGAATAGCTACACTAGTGACAGAAACATTGGCCGCAGTAGGCCTAAAAgtaagtcaag ... gtctgtgcagGGCGTTGAAGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGT