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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCGTACAAATGTTCTCAATGATGCATTCTATATTTCACATGATGGGGTGATCGGAACAATAAACAACTTTCGTCTTGGCCGCCTTCCTAATGTACAGgtaattatgcaaaatgtgcagatatcacgtccattcactatcttttagtgctttccttgaattctattcaagatgtacatggaatgttcatgttgatcctttgtgttaatgtaacaactgtgttactcttttcttag

Basic information

species Oryza sativa
transcript LOC_Os03g44200.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g44200.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G027857_T01 (Zea mays), 5'ss of exon 6
AAAGCGTACAAATGTTCTCAATGATGCATTCTATATTTCACATGATGGGGTGATCGGAACAATAAACAACTTTCGTCTTGGCCGCCTTCCTAATGTACAGgtaattat-------gcaaaatgtgcagatatcacgtccattcactatcttttagtgctttccttgaattctattcaagatgtacatggaatgttcatgttgatcctttgtgttaatgtaacaactgtgttactcttttcttag
 |||| ||| ||||||||||||||||||||||||||||||  |||||  || || | || |||||| |||||||| || || ||||||||||||||| ||||||||||       |||||||   ||||||  || |    |||||||     |||| ||||    |||  | | ||                                                                   
GAAGCATACTAATGTTCTCAATGATGCATTCTATATTTCATGTGATGAAGTAATTGCAAGAATAAATAACTTTCGCCTCGGACGCCTTCCTAATGTAGAGgtaattatacagattgcaaaatacacagatacaactttgggtcactat-----agtg-tttctgaaaatgatgtacag------------------------------------------------------------------

upper sequence: LOC_Os03g44200.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G092112_T01 (Zea mays), 5'ss of exon 6
AAAGCGTACAAATGTTCTCAATGATGCATTCTATATTTCACATGATGGGGTGATCGGAACAATAAACAACTTTCGTCTTGGCCGCCTTCCTAATGTACAGgtaattatgcaaaatgtgcagatatcacgtccattcactatcttttagtgctttccttgaa--ttctattcaagatgtacatggaatgttcatgttgatcctttgtgttaatgtaacaactgtgttactcttttcttag
 |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| || || || ||| |||||||| |||||||||| |  | ||   |      |||   |   || |  || |    || | || |    ||||  | |  |||||||                                                          
GAAGCGTACTAATGTTCTCAATGATGCATTCTATATATCACATGATGGAGTAATCGGAACAATAAATAACTTTCGCCTAGGACGTCTTTCTAATGTAGAGgtaattatactgattgcaaa------acgcatagatacaactttgtgtcactatactcggcgcttctgataataatgtacag---------------------------------------------------------

upper sequence: LOC_Os03g44200.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA11G21490.1 (Glycine max), 5'ss of exon 6
AAAGCGTACAAATGTTCTCAATGATGCATTCTATATTTCACATGATGGGGTGATCGGAACAATAAACAACTTTCGTCTTGGCCGCCTTCCTAATGTACAGgtaattatgcaaaatgtgcagatatcacgtccattcactatcttttagtgctttccttgaattctattcaagatgtacatggaatgttcatgttgatcctttgtgttaatgtaacaactgtgttactcttttcttag
 |||||||||||||| ||||||||||| |||   ||||| |||||||| | | | |||||||| ||||| ||||| |||||  | ||||||||  | |  ||||  ||||  || |||  |   |   |    || |   | | | | ||  ||  |||| ||         || | |||||     |    |  ||  | ||  || |                            
GAAGCGTACAAATGTGCTCAATGATGCCTTCCCCATTTCTCATGATGGAGAGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTgtaag-atgcctaaggtgttgtatttctggattttaatgttgtgtcaatgtgttg-ttgagttt-------aatatgcatggttgtcttccttctattgtatgctttta----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33807311|gb|CF329536.1|CF329536
EST:     TGATCGGAACAATAAACAACTTTCGTCTTGGCCGCCTTCCTAATGTACAG                         GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTG
genomic: TGATCGGAACAATAAACAACTTTCGTCTTGGCCGCCTTCCTAATGTACAGgtaattatgc ... cttttcttagGTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTG