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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAATCGGTCAAGGACGGTTTCTTAGTTGCATGGATTCTGTTTGGCACCCCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAGgtaaagagacctagcatatttcaacataacatgctttaagtaaatgagataactgacattatccattcatttgggaag

Basic information

species Oryza sativa
transcript LOC_Os03g42820.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g42820.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G342105_T02 (Zea mays), 5'ss of exon 2
TCCAATCGGTCAAGGACGGTTTCTTAGTTGCATGGATTCTGTTTGGCACCCCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAGgtaaagagacctagcatatttcaacataacatgctttaagtaaatgagataactgacattatccattcatttgggaag
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TCCAATTGGCCGCGGTCGGTTTCTCAGTTGTATGGACTCTGTTTGGCATCCCGAGTGCTTCAGGTGTTATGCTTGTGATAGACCAATATCAGAGTATGAGgtataca-attgaacat-tcctgacctaacattcttcagcttcacaagataattaacaccagcctttctctttgtaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33808071|gb|CF329925.1|CF329925
EST:     CCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAG                         TTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAGGAGCTT
genomic: CCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAGgtaaagagac ... atttgggaagTTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAGGAGCTT
EST: gi|33804763|gb|CF328259.1|CF328259
EST:     CCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAG                         TTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAGGGAGCTT
genomic: CCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAGgtaaagagac ... atttgggaagTTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAGGAGCTT