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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGGAGGTAATGACGCCTCTGGTGGATGTAGTTGCAATTGATGCTACCGCAACACTGATTGATTTCAAAAACTTATGGGAAACTCATCAGTACTCTAGgtatctcagctgtgaacttttagtatgcatcttcaattcttgttgttgacatgtgcagctcttacttccag

Basic information

species Oryza sativa
transcript LOC_Os03g39640.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g39640.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G153928_T02 (Zea mays), 5'ss of exon 1
TCAGGGAGGTAATGACGCCTCTGGTGGATGTAGTTGCAATTGATGCTACCGCAACACTGATTGATTTCAAAAACTTATGGGAAACTCATCAGTACTCTAGgtatc-tcagctgtgaacttttagtatgcatcttcaattcttgttgttgacatgtgcagctctt----acttccag
| ||||| |||||||||||| ||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||  ||| || | |  || | | ||| || ||||| |||| ||||| |||| ||| ||| ||    | ||||||
TGAGGGAAGTAATGACGCCTTTGGTGGACGTAGTAGCAATTGATGCTATCGCAACACTTATTGATTTCAAAAACTTGTGGGAAACTCATCAGTACTCTAGgtattgtcaactatca--ttgtcgcatgtattttcaagtcttattgttcacatctgctgctatttattatttccag

upper sequence: LOC_Os03g39640.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 7
TCAGGGAGGTAATGACGCCTCTGGTGGATGTAGTTGCAATTGATGCTACCGCAACACTGATTGATTTCAAAAACTTATGGGAAACTCATCAGTACTCTAGgtat--------ctcagctg---tgaacttttagt-atgcatcttcaattcttgttgttgacatgtgcagctcttacttccag
| || || || ||||| ||||| |||||||| |||||||||||||| |  ||||||||  |||||||| |  | || |||   |||||||||||||| ||||||          ||||||   || |  | |  | ||  |  |   |  |       | | || |   |  | | |||||||
TTAGAGAAGTGATGACACCTCTTGTGGATGTTGTTGCAATTGATGCCAGTGCAACACTTGTTGATTTCCATGAATTGTGGCTGACTCATCAGTACTCCAGgtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccag