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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTAGGGCCTGGTTTCTGGCTGCCATATACTTCATTACAGGATGCCCAGGTGCCTATTTTTCATGGTACCGGCCTCTTTATCGTGCCATGAGgtactacatataatgcccttactgattctctgaattaatattagcaaacattatagtattgtactagagtacctggtcaaaacttgatcatcactacttg...

Basic information

species Oryza sativa
transcript LOC_Os03g38600.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g38600.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G124938_T01 (Zea mays), 5'ss of exon 7
ACCCTAGGGCCTGGTTTCTGGCTGCCATATACTTCATTACAGGATGCCCAGGTGCCTATTTTTCATGGTACCGGCCTCTTTATCGTGCCATGAGgtactacat--ataatgcccttactg---attctctgaattaatattagcaaacattatagtattgtac-taga--gtacctggtcaaaacttgatcatcactacttg------------------------
| ||||||  |||||||||||| | ||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||| || |||||||| |  ||  || || ||  |||||    | ||   ||  | || |    |   ||   ||||    | |||   |||  |  | ||||| | |   ||||  || |                        
ATCCTAGGATCTGGTTTCTGGCAGTCATATACTTCATTACCGGATGCCCAGGTGCCTACTTTTTATGGTACCGACCTCTTTATCGCGCGATGAGgtattgtattaattattcctatactgtacgtgcttccaaaaactactttacagagtttctgtatgaagcatagtacgtatttatttaaaacataagattcacctctggtactatatatgatgctttcaccag

upper sequence: LOC_Os03g38600.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 7
ACCCTAGGGCCTGGTTTCTGGCTGCCATATACTTCATTACAGGATGCCCAGGTGCCTATTTTTCATGGTACCGGCCTCTTTATCGTGCCATGAGgtactacatataatgcccttactgattctctgaattaatattagcaaacattatagtattgtactagagtacc--tggtcaaaacttgatc--atcactacttg
  || |     |||||||| ||   ||| |||||| |  ||||    ||||| || ||| | |  ||||| || ||||||||||||||||||||||||||  |||  |      |   ||       ||||    || ||  ||   |||   | ||  ||| | ||  | ||      | | ||   ||||  | | 
GTCCGACAATTTGGTTTCTTGCCATCATCTACTTCTTATCAGGGGTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactatttatggttattccaaacatgactcccatta----tatcatccacactagacatatatcagacttccaattgtaggggatgggtcctgtcacgccatt