1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacacttatttttagcatgcaatatatgcacatttgctctcctgtttattaaagttgttgttgaagatagattctgtactcttgctttgtgtact...
species | Oryza sativa |
transcript | LOC_Os03g36790.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG GTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATTEST: gi|218497390|gb|FG957738.1|FG957738
genomic: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacac ... attgtttcagGTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
EST: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG GTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATTEST: gi|86434389|gb|CI094732.1|CI094732
genomic: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacac ... attgtttcagGTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
EST: GGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG GTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATTEST: gi|27547069|gb|CA765194.2|CA765194
genomic: GGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacac ... attgtttcagGTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
EST: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG GTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATTEST: gi|86417672|gb|CI031881.1|CI031881
genomic: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacac ... attgtttcagGTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
EST: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG GTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATTEST: gi|89179011|gb|CI043516.1|CI043516
genomic: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacac ... attgtttcagGTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
EST: GCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG GTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATTEST: gi|88223214|gb|CI223063.1|CI223063
genomic: GCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacac ... attgtttcagGTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
EST: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG GTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATTEST: gi|87012849|gb|CI297076.1|CI297076
genomic: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacac ... attgtttcagGTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
EST: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAG GTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
genomic: TGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacac ... attgtttcagGTTGGGACTGTGACAGCAATTTGCTTCACATGTTTCTTGATAAGATGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATTTTTCATGCTGAGGCGTTTTCCGATTGAATCAAAGGGCCGCAGAAAGAAGCTCTATGAGgtcgttacacttatttttagcatgcaatatatgcacatttgctctcctgtttattaaagttgttgttgaagatagattctgtactcttgctttgtgtact
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC