1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaagctcagtctccgttttcttctctgcaccaaactatatgtcaaactatgtcttgatattcttcttttggatgcag
species | Oryza sativa |
transcript | LOC_Os03g33590.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGA GTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGEST: gi|29671504|gb|CB667779.1|CB667779
genomic: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaag ... ttggatgcagGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCG
EST: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGA GTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGEST: gi|58677149|gb|CK065836.1|CK065836
genomic: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaag ... ttggatgcagGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCG
EST: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGA GTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGEST: gi|29671594|gb|CB667869.1|CB667869
genomic: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaag ... ttggatgcagGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCG
EST: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGA GTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGEST: gi|58695168|gb|CK083855.1|CK083855
genomic: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaag ... ttggatgcagGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCG
EST: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGA GTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGEST: gi|29666042|gb|CB662317.1|CB662317
genomic: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaag ... ttggatgcagGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCG
EST: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGA GTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCGEST: gi|29635555|gb|CB640564.1|CB640564
genomic: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaag ... ttggatgcagGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCG
EST: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGA GTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCG
genomic: CTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaag ... ttggatgcagGTCAATTACATTTCTTTCTGCTCTTCTAGAAGCGGAGGACCGTGCTGTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAACCAAAGCCTCCCTTGTTAGCAGCTGCTGTGTCTGCATGGGCACTTCTTTTGACAACTATTGTTTCATCAAAAAGAAACGTTGACTCTTGGAAAGAgttagtgaagctcagtctccgttttcttctctgcaccaaactatatgtcaaactatgtcttgatattcttcttttggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA