1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CAATAAGTGCTTTTTGGTCGACTGTGGGTCTGATTTATTTATATGGGTTGGTCGACTAACACAAGTGGAGGAGAGAAAAGCTGCAAGTGCAGCAGTTGAGgtaagtctcaagccattgttttcttcttttttttttcttgcctattcaaatttgttaggatctaaatttgcctttgtag
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCGACTAACACAAGTGGAGGAGAGAAAAGCTGCAAGTGCAGCAGTTGAG GAATTCATTGCTACTCAAAATAGGCCAAAGACAACAAGAGTAACCCGAGTGEST: gi|11442605|gb|BF430508.1|BF430508
genomic: GTCGACTAACACAAGTGGAGGAGAGAAAAGCTGCAAGTGCAGCAGTTGAGgtaagtctca ... gcctttgtagGAATTCATTGCTACTCAAAATAGGCCAAAGACAACAAGAGTAACCCGAGTG
EST: GTCGACTAACACAAGTGGAGGAGAGAAAAGCTGCAAGTGCAGCAGTTGAG GAATTCATTGCTACTCAAAATAEST: gi|58670145|gb|CK058831.1|CK058831
genomic: GTCGACTAACACAAGTGGAGGAGAGAAAAGCTGCAAGTGCAGCAGTTGAGgtaagtctca ... gcctttgtagGAATTCATTGCTACTCAAAATA
EST: GTCGACTAACACAAGTGGAGGAGAGAAAAGCTGCAAGTGCAGCAGTTGAG GAATTCATTGCTACTCAAAATAGGCCAAAGACAACAAGAGTAACCCGAGTG
genomic: GTCGACTAACACAAGTGGAGGAGAGAAAAGCTGCAAGTGCAGCAGTTGAGgtaagtctca ... gcctttgtagGAATTCATTGCTACTCAAAATAGGCCAAAGACAACAAGAGTAACCCGAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATAAGTGCTTTTTGGTCGACTGTGGGTCTGATTTATTTATATGGGTTGGTCGACTAACACAAGTGGAGGAGAGAAAAGCTGCAAGTGCAGCAGTTGAGgtaagtctcaagccattgttttcttcttttttttttcttgcctattcaaatttgttaggatctaaatttgcctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC