1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatgacatgaacctgtaaattcttctgtatattgttactcctttataaaagcctatatttgtcaaaatatgtggttgccagcctgttgtcagaac...
species | Oryza sativa |
transcript | LOC_Os03g21914.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GACAGATGGCACCCAAGTTTGGCAAGCTAAACAAATCATTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGACTTAAGAAAAGAGEST: gi|86259754|gb|CI065627.1|CI065627
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|163929298|gb|EG711035.1|EG711035
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|88239119|gb|CI240281.1|CI240281
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|27546018|gb|CA764157.2|CA764157
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|58679583|gb|CK068270.1|CK068270
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|33679512|gb|CF307751.1|CF307751
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAATTTTGGCAAGCTAAACAAATCATTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGACTTAAGAAAAGAGEST: gi|86886652|gb|CI312537.1|CI312537
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|88509021|gb|CI436527.1|CI436527
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: CAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|313079574|gb|HO213132.1|HO213132
genomic: CAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: TGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|58663098|gb|CK051784.1|CK051784
genomic: TGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|88257250|gb|CI359638.1|CI359638
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: AGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|44673938|gb|CR287372.1|CR287372
genomic: AGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|89179770|gb|CI044049.1|CI044049
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|8857451|gb|AU094769.1|AU094769
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAGEST: gi|218503197|gb|FG958153.1|FG958153
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
EST: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTG GTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTACGACAAGAG
genomic: GACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatga ... tatcatgtagGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGATTTAAGAAAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATGGCACCCAAGTTTGGCAAGTTAAACAAATCGTTAGCTGAACTGgtacgcatgacatgaacctgtaaattcttctgtatattgttactcctttataaaagcctatatttgtcaaaatatgtggttgccagcctgttgtcagaac
- - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA