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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGTGCTTATAACCCATCTTGCTGTATGGGGCTCTATAGCTGCAACATTTTTGTGCATGGTGTTAATAGATTCTATTCCAATATTCCCTAACTATGGgtaagttttcccagtgcctccctcaaaccatcatatatatatatttctaaatgacaacatttgaagtctatcatcttattactggcag

Basic information

species Oryza sativa
transcript LOC_Os03g21680.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g21680.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G398288_T01 (Zea mays), 5'ss of exon 6
GTTGGGTGCTTATAACCCATCTTGCTGTATGGGGCTCTATAGCTGCAACATTTTTGTGCATGGTGTTAATAGATTCTATTCCAATATTCCCTAACTATGGgtaagttttcccagtgcctccctcaaaccatcatatatatatatttctaaatgacaacatttgaagtctatcatcttattactggcag
|||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||              || ||    |  | ||  |||           | | ||| |||  |||||  ||||||| |||||||
GTTGGGTGCTTATAACCCATCTTGCTGTATGGGGTTCTATAGCTGCTACGTTTTTGTGCATGGTGTTAATTGACTCTATACCAATTTTCCCTAACTATGGgtaagtt--------------ctgaactactggtttacttattacctatggcaatagcatgtgac-tctattttcttattcctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163918640|gb|EG710322.1|EG710322
EST:     TTTTTGTGCATGGTGTTAATAGATTCTATTCCAATATTCCCTAACTATGG                         GACAATATACAATATGGCTGCTTCAAGAACTTATTGGCTTAGTGTTTGCCT
genomic: TTTTTGTGCATGGTGTTAATAGATTCTATTCCAATATTCCCTAACTATGGgtaagttttc ... ttactggcagGACAATATACAATATGGCTGCTTCAAGAACTTATTGGCTTAGTGTTTGCCT
EST: gi|33680714|gb|CF308953.1|CF308953
EST:     TTTTTGTGCATGGTGTTAATAGATTCTATTCCAATATTCCCTAACTATGG                         GACAATATACAATATGGCTGCTTCAAGAACTTATTGGCTTAGTGTTTGCCT
genomic: TTTTTGTGCATGGTGTTAATAGATTCTATTCCAATATTCCCTAACTATGGgtaagttttc ... ttactggcagGACAATATACAATATGGCTGCTTCAAGAACTTATTGGCTTAGTGTTTGCCT