1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGCTGGTGATAGACGAAGAACTGTTATGAGGCCTCCTCAAGTTCTTAGGGAAGGCACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctcacttttttaccactccataccatatgctctaggcctgcttttatttcagagaagataaattaccatgagctaactgaaatcatcgtttacacttccag
species | Oryza sativa |
transcript | LOC_Os03g21550.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTTGTG-ACTTCATGGATTTGTGCAAAAC AATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGGEST: gi|9865576|gb|AU101326.1|AU101326
genomic: TTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctc ... acacttccagAATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGG
EST: GAAGGCACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAAC AATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGGEST: gi|88205220|gb|CI205069.1|CI205069
genomic: GAAGGCACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctc ... acacttccagAATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGG
EST: ACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAAC AATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGGEST: gi|58588566|gb|CF986874.1|CF986874
genomic: ACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctc ... acacttccagAATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGG
EST: AAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAAC AATGC-GAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGGEST: gi|58597410|gb|CK007938.1|CK007938
genomic: AAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctc ... acacttccagAATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGG
EST: GAAGGCACAAAGAAGACAGTGTTTGTGAACTTCATGGATTTGTGCAAAAC AATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGGEST: gi|38478625|gb|CF962758.1|CF962758
genomic: GAAGGCACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctc ... acacttccagAATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGG
EST: GAAGGCACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGGGCAAAAC AATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGGEST: gi|89169705|gb|CI110064.1|CI110064
genomic: GAAGGCACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctc ... acacttccagAATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGG
EST: ACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAAC AATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGG
genomic: ACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctc ... acacttccagAATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCTGGTGATAGACGAAGAACTGTTATGAGGCCTCCTCAAGTTCTTAGGGAAGGCACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGCAAAACgtatgatctcacttttttaccactccataccatatgctctaggcctgcttttatttcagagaagataaattaccatgagctaactgaaatcatcgtttacacttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA