Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAATATTGGTGGCAGTGCGGTCGGCAGCGCCAACCCTCTCCGGCCTCCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAGgtttggccatgccactactttgagcagttgattactacttgattgtactggtcatttcgtgatcacttgcgattggaatgattcgatcaaatgcaatgagcag

Basic information

species Oryza sativa
transcript LOC_Os03g21160.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88978350|gb|CI384758.1|CI384758
EST:     CCCACATTGGACATACATTCGCCAAGGACCTGCTTCTTCCCCATGCCCAG                         GCTGTCCGAGCACGGGGCGATCGGGATGTAAAGTAGTCC
genomic: CCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAGgtttggccat ... caatgagcagGCTGTCCGAGCACGGGGCGATCGGGATGTAAAGTAGTCC
EST: gi|88906076|gb|CI089662.1|CI089662
EST:     CCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAG                         GCTGTCCGAGCACGGGGCGATCGGGATGTAAAGTAGTCCACAATGGAAGTG
genomic: CCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAGgtttggccat ... caatgagcagGCTGTCCGAGCACGGGGCGATCGGGATGTAAAGTAGTCCACAATGGAAGTG
EST: gi|87009541|gb|CI309062.1|CI309062
EST:     CCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAG                         GCTGTCCGAGCACGGGGCGATCGGGATGTAAAGTAGTCCACAATGGAAGTG
genomic: CCCACATTGGACATACCTTCGCCAAGGACCTGCTTCTTCCCCATGCCCAGgtttggccat ... caatgagcagGCTGTCCGAGCACGGGGCGATCGGGATGTAAAGTAGTCCACAATGGAAGTG