1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttgtgtacgcacagttgcacgcgtacctgctcacttgtgtgtactttagtgtttgttaggggttgaactgataagagtaagttttctctgcag
species | Oryza sativa |
transcript | LOC_Os03g20310.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATG GAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACAEST: gi|218492876|gb|FG956101.1|FG956101
genomic: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttg ... ttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
EST: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATG GAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAEST: gi|29658760|gb|CB655035.1|CB655035
genomic: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttg ... ttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGA
EST: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATG GAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACAEST: gi|112786792|gb|EE591448.1|EE591448
genomic: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttg ... ttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
EST: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATG GAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACAEST: gi|29658674|gb|CB654949.1|CB654949
genomic: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttg ... ttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
EST: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATG GAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
genomic: AATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttg ... ttctctgcagGAGCTATGACTTTTGATTTAGAATATGCCCGTTGGTTGGAGGAACAAAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATTTACATTTCGAGCTCAGGAGACCAAACTCATGCTATGAGTGGAAATGgtaagatttgtgtacgcacagttgcacgcgtacctgctcacttgtgtgtactttagtgtttgttaggggttgaactgataagagtaagttttctctgcag
- - - - - - - AGCTCA
- - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - AGTGGA