1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGAACTATGCAGTTTCTGGTGGTGTGAAGGGGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACGgttagtgttcctgcacatctatatatgatatattatctatcataatttgatgtttttggaaatatagttggcttatctactgaatactgaacccactgtt...
species | Oryza sativa |
transcript | LOC_Os03g18590.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCCAAAGCAAAGTCCTTTAAGGCCAGAATGACG GTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCTEST: gi|29678025|gb|CB674300.1|CB674300
genomic: GCCAAAGCAAAGTCCTTTAAGGCCAGAATGACGgttagtgttc ... atcttaccagGTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCT
EST: GGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACG GTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCTEST: gi|88974541|gb|CI022082.1|CI022082
genomic: GGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACGgttagtgttc ... atcttaccagGTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCT
EST: GGATTGAAGCAGTCGAAGCCCAAGCCAAGTCCTTTAAGGCCAGAATGACG GTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCTEST: gi|58677960|gb|CK066647.1|CK066647
genomic: GGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACGgttagtgttc ... atcttaccagGTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCT
EST: GGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACG GTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACEST: gi|88962243|gb|CI097396.1|CI097396
genomic: GGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACGgttagtgttc ... atcttaccagGTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAAC
EST: CGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACG GTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCTEST: gi|25800454|gb|CA756415.1|CA756415
genomic: CGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACGgttagtgttc ... atcttaccagGTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCT
EST: GGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACG GTGCGCCTAGCTGTTGCTGGTGCTTTCCATACNAGCTTCATGCAACCTGCTEST: gi|86827662|gb|CI272928.1|CI272928
genomic: GGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACGgttagtgttc ... atcttaccagGTGCGCCTAGCTGTTGCTGGTGCTTTCCATACAAGCTTCATGCAACCTGCT
EST: TTTAAGGCCAGAATGACG GTGCGCCTAGCTGTTGCTGGTGGCTTTCCATACAAGCTTCATGCAACCTGC
genomic: TTTAAGGCCAGAATGACGgttagtgttc ... atcttaccagGTGCGCCTAGCTGTTGCTGGT-GCTTTCCATACAAGCTTCATGCAACCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAACTATGCAGTTTCTGGTGGTGTGAAGGGGATTGAAGCAGTCGAAGCCAAAGCAAAGTCCTTTAAGGCCAGAATGACGgttagtgttcctgcacatctatatatgatatattatctatcataatttgatgtttttggaaatatagttggcttatctactgaatactgaacccactgtt
- - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG