1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CTTGATGAATTTATCATCCCACTGGTCCAAGGAAatatccaaaatctcagatattttcactgcttatttttttattcttatctctacttttcactggtgtgtattgagcatttaccttttacatgtaacatcgg...
species | Oryza sativa |
transcript | LOC_Os03g18080.1 |
intron # | 7 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: CTTGATGAATTTATCATCCCACTGGTCCAAGGAA GTTTTCAGACAGCGCAATTTTCCTTAGAGGAGGCACCTGTCAGAATAACGTEST: gi|29624693|gb|CB629704.1|CB629704
genomic: CTTGATGAATTTATCATCCCACTGGTCCAAGGAAatatccaaaa ... actatttaacGTTTTCAGACAGCGCAATTTTCCTTAAAGGAGGCACCTGTCAGAATAACGT
EST: CTTGATGAATTTATCATCCCACTGGTCCCAAGGAA GTTTTCAGACAGCGCAATTTTCCTTAAAGGA
genomic: CTTGATGAATTTATCATCCCACTGGTCC-AAGGAAatatccaaaa ... actatttaacGTTTTCAGACAGCGCAATTTTCCTTAAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGATGAATTTATCATCCCACTGGTCCAAGGAAatatccaaaatctcagatattttcactgcttatttttttattcttatctctacttttcactggtgtgtattgagcatttaccttttacatgtaacatcgg
- - - - - - - - - - - - - - AAGGAA