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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACCAGCTTGTTCTTGAGGAAGTTGTACGAGAAAGATTCCCAAAACTTGgtttgtatttcaatgatattattactacacttgtccttttgtagcattctgcatttcacattatcttaaaaaaaacatggtcctggtcatgcttttgtattcagttgaaatgttgagatgactttatttgtttgaacacataatgtatcaactttgtggtgtatcactctgtacttacatcaattacaaccctctttcag

Basic information

species Oryza sativa
transcript LOC_Os03g17540.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17540.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 8
GTTGACCAGCTTGTTCTTGAGGAAGTTGTACGAGAAAGATTCCCAAAACTTGgtttgtatttcaatgatattattactacacttgtccttttgtagcattctgcatttcacattatcttaaaaaaaacatggtcctggtcatgcttttgtat-tcagttgaaatgttgagatgactttatttgtttgaacacataatgtatcaactttgtggtgtatcactctgtacttacatcaattacaaccctctttcag
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GTTGACCAACTCGTCCTTGAGGAGGTTGTACGAGAAAGGTTCCCTAAATTGGgtatgttttccaatgatgt---cactatatttgtctttg---------ccatgtttaattatatgttaaaaaaaa-----tcacacatatgtttgtgactattgcttaatattttga------------------------------------------------------------------------------------