1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGACTTATCCAGCAATACGTTGAGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATTgtgagtgttttttatcttgataaatccattgaatttttatgctaactttgtgcggcaaattaaataagaaatttcacctgtgcag
species | Oryza sativa |
transcript | LOC_Os03g16010.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATT CAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACTEST: gi|58660858|gb|CK049538.1|CK049538
genomic: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATTgtgagtgttt ... acctgtgcagCAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACT
EST: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATT CAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACTEST: gi|58670134|gb|CK058820.1|CK058820
genomic: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATTgtgagtgttt ... acctgtgcagCAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACT
EST: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATT CAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACTEST: gi|58669348|gb|CK058034.1|CK058034
genomic: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATTgtgagtgttt ... acctgtgcagCAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACT
EST: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATT CAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACTEST: gi|58670343|gb|CK059029.1|CK059029
genomic: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATTgtgagtgttt ... acctgtgcagCAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACT
EST: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATT CAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACT
genomic: AGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATTgtgagtgttt ... acctgtgcagCAATGTTTCCATGAATTTCCTGACAGGAGCAATACCATCTGATGGTTCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTTATCCAGCAATACGTTGAGCGGATCGATTCCACCCTCTCTTGATAAGCTGGCCAAGCTTACATCATTgtgagtgttttttatcttgataaatccattgaatttttatgctaactttgtgcggcaaattaaataagaaatttcacctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT