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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGAGGCTGTGTCCTGGTAGCATCTAGTCCAGAAATTCTTACTCGTGTGAGGAAGgtatgtaaactctcctactgatgatagttggaatacattttttcttttcattaacattcatccttttaaatctttttcag

Basic information

species Oryza sativa
transcript LOC_Os03g15780.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g15780.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G161337_T02 (Zea mays), 5'ss of exon 6
GCAAGAGGCTGTGTCCTGGTAGCATCTAGTCCAGAAATTCTTACTCGTGTGAGGAAGgtatgtaaact------ctcctactgatgatagttggaatacattttt-tcttttcattaacattcatccttttaaatctttttcag
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GCAAGAGGCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaattttggaccttttatgattattcattagattataaaattgtcttctcacaaatgtgcacatttttttaatattctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38565724|gb|CK085177.1|CK085177
EST:     GCTGTGTCCTGGTAGCATCTAGTCCAGAAATTCTTACTCGTGTGAGGAAG                         GGTAAAATTATTAACCGTCCACTTGCTGGGACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTCCTGGTAGCATCTAGTCCAGAAATTCTTACTCGTGTGAGGAAGgtatgtaaac ... tctttttcagGGTAAAATTATTAACCGTCCACTTGCTGGGACTGTTCGAAGGGGCAAGACA
EST: gi|29662735|gb|CB659010.1|CB659010
EST:     GCTGTGTCCTGGTAGCATCTAGTCCAGAAATTCTTACTCGTGTGAGGAAG                         GGTAAAATTATTAACCGTCCACTTGCTGGGACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTCCTGGTAGCATCTAGTCCAGAAATTCTTACTCGTGTGAGGAAGgtatgtaaac ... tctttttcagGGTAAAATTATTAACCGTCCACTTGCTGGGACTGTTCGAAGGGGCAAGACA