1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTAGGAGGAACAGGACTAGCTGGGATTGACTGCAAGTTATTTTGCTTAAAATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATGgtaaacccttattgctttccctgccttaatccccattttttggtcccaaaatgttcctatcactaatatcaatgtgatag
species | Oryza sativa |
transcript | LOC_Os03g14510.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATG TAACTCAGGTTCTGACAACTAGTATTTGCTCCGCGTGGTTCTTGAGCGTGGEST: gi|88963934|gb|CI032851.1|CI032851
genomic: AATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATGgtaaaccctt ... aatgtgatagTAACTCAGGTTCTGACAACTAGTATTTGCTCCGCGTGGTTCTTGAGCGTGG
EST: AATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGC--- --A-T--GGTTCTGACAACTAGTATTTGCTCCGCGTGGTTCTTGAGCGTGGEST: gi|88509048|gb|CI436554.1|CI436554
genomic: AATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATGgtaaaccctt ... aatgtgatagTAACTCAGGTTCTGACAACTAGTATTTGCTCCGCGTGGTTCTTGAGCGTGG
EST: AATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATG TAACTCAGGTTCTGACAACTAGTATTTGCTCCGCGTGGTTCTTGAGGGTGGEST: gi|88481011|gb|CI418282.1|CI418282
genomic: AATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATGgtaaaccctt ... aatgtgatagTAACTCAGGTTCTGACAACTAGTATTTGCTCCGCGTGGTTCTTGAGCGTGG
EST: AATCATACCTNTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATG TAACTCAGGTTCTGACAACTANTATTTGCTCCGCGTGGTTCTTGAGCGTGG
genomic: AATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATGgtaaaccctt ... aatgtgatagTAACTCAGGTTCTGACAACTAGTATTTGCTCCGCGTGGTTCTTGAGCGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAGGAGGAACAGGACTAGCTGGGATTGACTGCAAGTTATTTTGCTTAAAATCATACCTGTATTTCGTGCCCTTTTGAGGTGATCAAGCTTCCCGCATGgtaaacccttattgctttccctgccttaatccccattttttggtcccaaaatgttcctatcactaatatcaatgtgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT