1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAGGCTCTTGCAATGTCAATGGAGGAGGGTTCTTCAGGGGCTGCAGCGGCTGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtccttttctccgctgagctctttcattcttctataactttaatttaattcattcaaacgacaatgattcaggacttactagttcataggtgtatc...
species | Oryza sativa |
transcript | LOC_Os03g13970.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|5055982|gb|AU075361.1|AU075361
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|218483651|gb|FG955547.1|FG955547
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|33657882|gb|CF280496.1|CF280496
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86834663|gb|CI340780.1|CI340780
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|33801681|gb|CF326712.1|CF326712
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88247152|gb|CI247001.1|CI247001
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGCCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88840672|gb|CI080126.1|CI080126
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCCTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88217668|gb|CI217517.1|CI217517
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88971753|gb|CI388991.1|CI388991
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: AGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|44670518|gb|CR283952.1|CR283952
genomic: AGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|58675750|gb|CK064437.1|CK064437
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|29678148|gb|CB674423.1|CB674423
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88840095|gb|CI079549.1|CI079549
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88841708|gb|CI080964.1|CI080964
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86537394|gb|CI177600.1|CI177600
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88262482|gb|CI366256.1|CI366256
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGGCAGAGGCTGCTGTAGATGACCAGGAC-TGGCACTAG CTCTTCAAATGTCTGTCCA-GACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88830946|gb|CI079380.1|CI079380
genomic: TGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86413292|gb|CI067697.1|CI067697
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86428134|gb|CI073231.1|CI073231
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAAAGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86486706|gb|CI129339.1|CI129339
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|86419054|gb|CI053855.1|CI053855
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88245959|gb|CI245808.1|CI245808
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|6449564|gb|AU081506.1|AU081506
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAG CTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGAEST: gi|88262261|gb|CI365837.1|CI365837
genomic: TGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
EST: GCAGAGGCTTCTGTAGATGACCAGTACTGGGCACTAG CTCTTCAAATGTCTTTGCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
genomic: GCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtcctt ... ttctgcgcagCTCTTCAAATGTCTGTCCAGGACGCAGGCGGGTCTAGTCAGTCTGATATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGCTCTTGCAATGTCAATGGAGGAGGGTTCTTCAGGGGCTGCAGCGGCTGATGCTGCTATGGCAGAGGCTGCTGTAGATGACCAGGACTTGGCACTAGgtaggtccttttctccgctgagctctttcattcttctataactttaatttaattcattcaaacgacaatgattcaggacttactagttcataggtgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT