Skip to another splice site:
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag

Basic information

species Oryza sativa
transcript LOC_Os03g09250.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa---aaacttagttttggattaaaacttgtccatgtattcttc--tgcag
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||  ||||||||||| |||||||||||||| |||||||| ||  |  ||  | |  |    | |  |    |    | |  |  |    |||| ||| |||  ||| |||| || |  |   ||  |   |||||
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgatcttccacctctttaaaaagctggcacgtgcagcagtttaaacgtagatttacattgaaacctgccactcctttgctgcatgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G392513_T02 (Zea mays), 5'ss of exon 5
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa---aaacttagttttggattaaaacttgtccatgtattcttc--tgcag
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||  | ||||||||| ||||||||| |||| |||||||| |   |  |   | |  |    | |  |    |    |||  |  |    |||| ||| |||  ||||||||||| |  |   ||  |   |||||
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCCGACGAGCATCCCGATCATGTTATTGTCATCAAGgtctattagctaatcttccacctctttaaaaagctggcacatgcagcagtttaaacgtagatttacattaaaacttgccactcctttgctgcatgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G010768_T01 (Zea mays), 5'ss of exon 1
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa----aaacttagttttggattaaaacttgtccatgtattcttc---tgcag
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| || |||||||||||| ||||  |||||||| |||||| ||||  |  ||  | |  |    | |  |  ||  |||   |  |  |    |||| ||| |||  ||| ||||||| |||   |||  |    |||||
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCAAGCAATGCCATTCTCTATGGGCCTGGCGAGCATCCCGATCTCGTTGTTGTCATCAAGatttgttagctgatcttccacctcttta-aaaagcttgcaggtgcagtagtttaaacgtagatttacattgaaacttg-ccactcatttgttgcatgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G145638_T02 (Zea mays), 5'ss of exon 3
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaa---aaacttagttttggattaaaacttgtccatgtattcttc---tgcag
||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||  ||||||||||| |||||||||||||| |||||||| ||  |  ||  | |  |    | |  |    |    |||  |  |    |||| ||| |||  ||| ||||||| |||   |||  |    |||||
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATTGTCTCAAGCAATGCCATTCTCTATGGGCCCGGCGAGCATCCCGATCATGTTGTTGTCATCAAGgtctgttagctgaacttccacctctttaaaaagatggcacatgcagcagtttaaacgtagatttacattgaaacttg-ccactcatttgttgcatgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G155242_T01 (Zea mays), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||  ||||||||||| |||||||| ||||| |||||||| ||  |  ||  | |  |  | ||   |  ||| || |||    ||       || |||  ||| |||||||||  | | || ||  ||||
CAAGGAGATCTCCAAGAGCAACGTGGTGGATGACATGGTCTCGAGCAATGCCATCCTCTATGAGCCCGGCGAGCATCCCGATCATGTCGTTGTCATCAAGgtctgttagctgatctttca--cctcgttaaaagt-tgacatatgcaagg----cagatttacattgaaacttgtcactcttttgtt--gcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA08G14670.3 (Glycine max), 5'ss of exon 6
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattc-ttctgcag
 ||||| || |||||||||||||| || || || ||||||   ||||| |||||||||||||||| ||| || ||||| || ||||| ||||| || |||||    ||||| |   |  | ||     |  |  | |   ||| ||      |||  ||| |  |      |  |  || ||||  || |||||
GAAGGAAATTTCCAAGAGCAATGTTGTTGACGATATGGTCAACAGCAACGCCATCCTCTATGAGCCTGGTGAACATCCGGACCATGTGGTTGTCATTAAGgt----aatttttatttttagtcactcact-ctctttcaaattcaattggttctttattt-gactcttcggtaattaatttattggttttgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA18G02210.3 (Glycine max), 5'ss of exon 7
--------------------------------CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag
                                |||||| |||||||||||||| || || || || ||||||   |||||||||||||||||||||| ||| || ||||| || ||||||||||| || |||||    | ||  | ||   ||| |||   |    | |  | |   |                                               
ATGAATCTCTCGGCTCCACAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGgtgaacatcccgaccatgttgttgttattaaggt--atatttgtttcacccatttttcactatttctttctcttgtcag----------------------------------------------

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA05G31450.4 (Glycine max), 5'ss of exon 4
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtt-tgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag
 ||||| ||||||||||||||||| || || || ||||||   ||||| ||||||||||||||||  || || ||||| || ||||| ||||| || |||||  |    ||| |   |  ||| ||   ||  | |    | || |||   || |   | ||   || | ||||     | | |  || |||||
TAAGGAAATCTCCAAGAGCAATGTTGTTGACGATATGGTCAACAGCAACGCCATCCTCTATGAGCCCGGTGAACATCCAGACCATGTGGTTGTCATTAAGgtaattttttttatttttttatttttagtcactactccctctttcaaattcaattggttatttttttgacactttggtttat-tgtttttgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA18G02210.4 (Glycine max), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag
|||||| |||||||||||||| || || || || ||||||   |||||||||||||||||||||| ||| || ||||| || ||||||||||| || ||||| |  | ||  | ||   ||| |||   |    | |  | |              || || ||||  | ||  |   |   | | | |||||
CAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACATCCCGACCATGTTGTTGTTATTAAGgtat--atttgtttcacccatttttcactatttctttctctt---------gtcaggtctttgattctatctgctttgt---tgcctttgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: AT2G22240.1 (Arabidopsis thaliana), 5'ss of exon 5
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttgga---ttaaaacttgtccatgt----attcttctgcag
 |||||||| || ||||||||||| || || ||||||||  | || |||| |||||||| ||||| ||| || || ||||| ||||| ||||| |||||||||||   ||    ||  |       || | || |    | ||       || |   ||||  |   ||||| | ||    |||    | | || |||||
TAAGGAGATTTCAAAGAGCAATGTTGTAGACGACATGGTAGCTAGTAATGGCATCCTCTTTGAGCCTGGTGAACACCCTGACCATGTCGTTGTCATCAAGgtttgattttgaatcagaggccagagtg-atcaattcctcctttctttttaagtacattttaaagtcttaaatcctgctattgttctgaatgttttgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattc-ttctgcag
 |||||||||||||| |||||||| || || || |||||  | |||||||  ||||||| ||||| ||| || || || || ||||||||||| ||||||||    |      |          ||   | | || | |  ||       ||  |    |   ||| |  |   |   ||| ||  || || ||
TAAGGAGATCTCCAAAAGCAATGTCGTGGACGATATGGTTGCTAGCAATGGTATCCTCTTTGAGCCTGGGGAACACCCGGACCATGTTGTTGTCATCAAGgtaaatagagaaccggacagacactcaaaacctgt-ttctgttggc----aatctgagatcccattgat-ccaatttgtgtgtttgttttgtag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgt---ttgca-atttgtccatggattcttctgca--gcagt----atgccattaaaaaaaaacttagttttg--gattaaaacttgtccatgtattc--ttctgcag
|||||||||||||||||||||||| ||||| ||||||||  | ||||| || ||||| ||||||| ||| ||||| ||||| ||||| || || ||||||||   | ||| |    ||| |   ||  | || |   || |    ||||   |    |   | | | | |    |  ||| | |   |  |||  |   |  |||||
CAAGGAGATCTCCAAGAGCAATGTTGTCGACGACATGGTTGCCAGCAACGCTATCCTGTATGAGCCTGGGGAGCACCCTGACCATGTGGTGGTCATCAAGgtatatcgcagaaccctccttttgtttgtatgtattacaattcagatgctggtttggactcattcattctcactggctaacattatacggtgttgttgatattgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 5'ss of exon 6
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgt-ttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag------------------------------------------
|||||||||||||||||||||||| || || ||||||||  | |||||| | || || || | ||  || || ||||| || || ||| ||||||||||||| ||   || | | |       || | |     || | | |   |        ||  |||  || |  || |||||    |   |  |                                               
CAAGGAGATCTCCAAGAGCAATGTAGTGGACGACATGGTGGCTAGCAATTCGATTCTATACGCGCCCGGTGAACATCCCGACCACGTTATTGTGATCAAGgtattcttatctctactccagccctgcagtcaatgttttcaagccatttcggctttgatttcagactccaagttgtctgcattcacaccgattctcgaatcttcctcttaaccaaaatcaatgacggcgtctgcag

upper sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 7
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 7
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag
|||||| |||||||||||||||||||| || |||||||| || |||||||||||| | |   |||  || || ||||||||||||||  | || ||||||||    ||     |  | |||| || |  ||  | |   |     |       || |||||  |                             
CAAGGAAATCTCCAAGAGCAATGTGGTTGACGACATGGTTTCTAGCAATGCCATCTTGTTCAAGCCCGGTGAACATCCTGATCATGTGATCGTCATCAAGgt---aaaacaaacgcttgatttttttctag--ggaaaactcccgagtttgctttcgttttctag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660212|gb|CB656487.1|CB656487
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|58595947|gb|CK006475.1|CK006475
EST:     CTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAGTGGACGAGTACACCTCA
genomic: CTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|33381225|gb|CF196568.1|CF196568
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|3760166|gb|C97424.1|C97424
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|218498582|gb|FG966060.1|FG966060
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|29646113|gb|CB651120.1|CB651120
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|87018994|gb|CI256879.1|CI256879
EST:     CATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|58595830|gb|CK006358.1|CK006358
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|11443012|gb|BF430899.1|BF430899
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|218494828|gb|FG945589.1|FG945589
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|58685454|gb|CK074141.1|CK074141
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|38479690|gb|CF963779.1|CF963779
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|29616446|gb|CB621458.1|CB621458
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|29686334|gb|CB682609.1|CB682609
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|87035170|gb|CI189792.1|CI189792
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|218485055|gb|FG967785.1|FG967785
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|163929263|gb|EG711024.1|EG711024
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCA
EST: gi|218504141|gb|FG945017.1|FG945017
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|29686335|gb|CB682610.1|CB682610
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|58671384|gb|CK060070.1|CK060070
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|218486080|gb|FG945047.1|FG945047
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|58657984|gb|CK046664.1|CK046664
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|66922317|gb|CX109165.1|CX109165
EST:     CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|10930987|gb|AU161261.1|AU161261
EST:     GAGCTTGGCGGAGCATCCTGAATCATGTTGTTGTGATCAAG                         TATTTCCCGTATTTTGGAGACAGCAAGAGGNCATTGGACGAGTACACNTCA
genomic: GAGCTTGGC-GAGCATCCTG-ATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|218485553|gb|FG949786.1|FG949786
EST:     CCATCCTCTATGAGCCTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
EST: gi|38482291|gb|CF966336.1|CF966336
EST:     CATGCGTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAG                         TATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA
genomic: CAT-CCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatt ... tcttctgcagTATGTGCCGTATGTTGGAGACAGCAAGAGGGCAATGGACGAGTACACCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGAGATCTCCAAGAGCAATGTGGTCGATGACATGGTCTCAAGCAATGCCATCCTCTATGAGCTTGGCGAGCATCCTGATCATGTTGTTGTGATCAAGgtttgcaatttgtccatggattcttctgcagcagtatgccattaaaaaaaaacttagttttggattaaaacttgtccatgtattcttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT