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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCTgtaagaaatcaacctataagtaattaatattttatttgcacgtgcagtaccacatctcatatctttgctttcctatag

Basic information

species Oryza sativa
transcript LOC_Os03g08550.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g08550.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G330907_T01 (Zea mays), 5'ss of exon 8
ATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCTgtaagaaatcaacc-tataagtaattaatattttatttgcacgtgcagtaccacatctcatatctttgctttcctatag
 ||| |||||||||| |||||||||||||||||||||||| | || || || ||||||||    |||| || |||||||  |  || | | |  |  || ||||||| || |||||||| |||||||| | | ||||  || |||
GTATTTGCAGAACAACCAATTTACTGGTTATATCAATGTCTTAGCCAACCTTCCCCTTGAAACCCTgtgagtaatcaactatgaaattcaatggtgcttcatttgcatgttcagtaccatatctcataacct-gcttgtctctag

upper sequence: LOC_Os03g08550.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G153393_T01 (Zea mays), 5'ss of exon 8
ATATCTGCAGAACAATCAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCTgtaagaaatcaacc-tataagtaattaatattttatttgcacgtgcagtaccacatctcatatctttgctttcctatag
 ||| |||||||||| |||||||||||| ||||||||||| | || ||||||||||||||   | ||| || |||||||  |  || | | |  |  |||||||||| || || ||||| || ||||| ||| |||| ||| |||
GTATTTGCAGAACAACCAATTTACTGGTAATATCAATGTCTTAGCCAATCTCCCCCTTGAAACTTTgtgagtaatcaactgtgaaattcaatggtgctttatttgcatgttcattaccatatttcataactt-gcttgcctctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58652520|gb|CK041200.1|CK041200
EST:     CAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCT                         GAATGTTGCAAACAATCATTTCACTGGCTGGATTCCTAGTCAACTTAAGAA
genomic: CAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCTgtaagaaatc ... tttcctatagGAATGTTGCAAACAATCATTTCACTGGCTGGATTCCTAGTCAACTTAAGAA
EST: gi|58661405|gb|CK050085.1|CK050085
EST:     CAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCT                         GAATGTTGCAAACAATCATTTCACTGGCTGGATTCCTAGTCAACTTAAGAA
genomic: CAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCTgtaagaaatc ... tttcctatagGAATGTTGCAAACAATCATTTCACTGGCTGGATTCCTAGTCAACTTAAGAA
EST: gi|58658124|gb|CK046804.1|CK046804
EST:     CAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCT                         GAATGTTGCAAACAATCATTTCACTGGCTGGATTCCTAGTCAACTTAAGAA
genomic: CAATTTACTGGTTATATCAATGTCCTTGCTAATCTCCCCCTTGATGATCTgtaagaaatc ... tttcctatagGAATGTTGCAAACAATCATTTCACTGGCTGGATTCCTAGTCAACTTAAGAA