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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGgtaggtatactcttttctcttgataacaaagaaactaaaagaagtttttttttctcgaccaaaagaagtttttataatacttgtattgttcttgaacag

Basic information

species Oryza sativa
transcript LOC_Os03g08070.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g08070.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G855347_T02 (Zea mays), 5'ss of exon 2
GATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGgt----aggtatactcttttctcttgataacaaagaaactaaaagaagtttttttttctcgaccaaaagaagtttttataatacttgtattgttcttgaacag
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GATGGCCCGCTAAAGATTAGAGCAACATGTACTGGACCATCATCAACAATAGCTAAGATAGTCCGCATGgttgtgaaacacaccctttgctgttgagagtaaagc--------gaag------------ggtgaaaagggtgtttaactatatatgta---tccttgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622946|gb|CB627957.1|CB627957
EST:     AAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATG                         GTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCA
genomic: AAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGgtaggtatac ... tcttgaacagGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCA