1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccctagcatatgaagctatttgctttcacgatgtccaagaagcaggatagctaacaagagaacatgctattttatttcaaattaatcaagctg...
species | Oryza sativa |
transcript | LOC_Os03g05740.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|88531758|gb|CI460263.1|CI460263
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|88558722|gb|CI489236.1|CI489236
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|6782805|gb|C99985.1|C99985
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|55412383|gb|CV724759.1|CV724759
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|300216317|gb|HO088102.1|HO088102
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|25803490|gb|CA759389.1|CA759389
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGNTTCGEST: gi|3760087|gb|C97345.1|C97345
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: CATCGAGACATCCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|33659269|gb|CF281882.1|CF281882
genomic: CATCGAGACAT-CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|88543207|gb|CI473197.1|CI473197
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|88526494|gb|CI454559.1|CI454559
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|88264996|gb|CI368770.1|CI368770
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACACCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|88529698|gb|CI458036.1|CI458036
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|33666789|gb|CF297756.1|CF297756
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGEST: gi|88526963|gb|CI455065.1|CI455065
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
EST: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAG GAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
genomic: TCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccc ... ccttgtacagGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGgtatgccccctagcatatgaagctatttgctttcacgatgtccaagaagcaggatagctaacaagagaacatgctattttatttcaaattaatcaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccta