1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCTGGTAGGAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaagtgaaactaaaaacataatgtgcaacccttgttgctattctgttactgctgttaaatgatgactcaccaagtggaatatttacttcagctatacatttattataatttcag
species | Oryza sativa |
transcript | LOC_Os03g05720.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGCACTTGACACTGGCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAG GAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGEST: gi|86501444|gb|CI144077.1|CI144077
genomic: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaa ... ataatttcagGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
EST: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAG GAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGEST: gi|29634108|gb|CB639117.1|CB639117
genomic: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaa ... ataatttcagGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
EST: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCCCCAG GAAGGACAAAATAATGGGAATGGAATTACATTTCAACCCAATGTTATAATGEST: gi|7332525|gb|AU085871.1|AU085871
genomic: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaa ... ataatttcagGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
EST: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACCCCTTGATCAGCACCAG G-AGGACAAAATAATGGGAATGGAACTACATTTCANCCCAATGTTATAATGEST: gi|218485889|gb|FG950181.1|FG950181
genomic: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaa ... ataatttcagGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
EST: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAG GAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGEST: gi|218482933|gb|FG946915.1|FG946915
genomic: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaa ... ataatttcagGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
EST: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAG GAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGEST: gi|218478499|gb|FG957068.1|FG957068
genomic: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaa ... ataatttcagGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
EST: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAG GAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATGEST: gi|218482633|gb|FG949654.1|FG949654
genomic: ATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaa ... ataatttcagGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
EST: CTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAG GAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
genomic: CTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaa ... ataatttcagGAAGGACAAAATAATGGGAATGGAACTACATTTCAACCCAATGTTATAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGGTAGGAAAACCAAAGAGACAGTAACTGCTGCTGATGCAATTATTGATGCACTTGACACTGCCGAGGAAGAAGTAAAACGCCTTGATCAGCACCAGgtattaaaaagtgaaactaaaaacataatgtgcaacccttgttgctattctgttactgctgttaaatgatgactcaccaagtggaatatttacttcagctatacatttattataatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT