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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAATGATCCTCATGAGGCGATTGATCGAATTGTGAGAGgttccttctttgattcttcttttatagtgtgtgctgtcagtccatactcgtggtctcatagtggtcattcatctcctggtatatgtatatgaatgcacag...

Basic information

species Oryza sativa
transcript LOC_Os03g03400.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03400.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G382537_T01 (Zea mays), 5'ss of exon 7
GACAAATGATCCTCATGAGGCGATTGATCGAATTGTGAGAGgttccttctttgattcttcttttatagtgtgtgctgtcagt---ccatactcgtg-gtctcatagtggtcattcatctcctggtatatgtatatgaatgcacag
|||||||||||||| ||  || |||||||||||||||||||||| |||  ||||| | |  ||| || |||||    | |     | |||||  |  ||||     |     ||  | |  ||| | | | ||            
GACAAATGATCCTCGTGTCGCAATTGATCGAATTgtgagaggtttctttcttgataccttctttttattgtgtttgattaaagtgctatactgctatgtctgcctttaaatgttt-ttttatggaacaagcatgc----------

upper sequence: LOC_Os03g03400.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G812553_T01 (Zea mays), 5'ss of exon 7
GACAAATGATCCTCATGAGGCGATTGATCGAATTGTGAGAGgttccttctttga----ttcttcttttatagtgtgtgctgt-cagtccatactcgtggtctcatagtggtcattcatctcctggtatatgtatatgaatgcacag
|||||||||||| ||||| |||||||||||||||||||||||||  ||| ||||    |||| ||||||| |||| ||  ||    |   |     |  | |  |  ||  ||  |||  | |  | | |   ||           
GACAAATGATCCCCATGACGCGATTGATCGAATTgtgagaggttttttccttgacactttctccttttattgtgtttgaagtgttatgtctgtctttacttttttcttgagcacgcatgcctttttttcta-gta-----------

upper sequence: LOC_Os03g03400.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G812553_T02 (Zea mays), 5'ss of exon 7
GACAAATGATCCTCATGAGGCGATTGATCGAATTGTGAGAGgttccttctttga----ttcttcttttatagtgtgtgctgt-cagtccatactcgtggtctcatagtggtcattcatctcctggtatatgtatatgaatgcacag
|||||||||||| ||||| |||||||||||||||||||||||||  ||| ||||    |||| ||||||| |||| ||  ||    |   |     |  | |  |  ||  ||  |||  | |  | | |   ||     ||    
GACAAATGATCCCCATGACGCGATTGATCGAATTGTGAGAGgttttttccttgacactttctccttttattgtgtttgaagtgttatgtctgtctttacttttttcttgagcacgcatgcctttttttcta-gtaaagtagc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682220|gb|CK070907.1|CK070907
EST:     GACAAATGATCCTCATGAGGCGATTGATCGAATTGTGAGAG                         GAGTCAAATCAAAACTAGATATAGGTATGATGGAAGGGCCAGATGGAAACC
genomic: GACAAATGATCCTCATGAGGCGATTGATCGAATTGTGAGAGgttccttctt ... atttttgcagGAGTCAAATCAAAACTAGATATAGGTATGATGGAAGGCCCAGATGGAAACC
EST: gi|29641406|gb|CB646413.1|CB646413
EST:     AATGATCCTCATGAGGCGATTGATCGAATTGTGAGAG                         GAGTCAAATCAAAACTAGATATAGGTATGATGGAAGGCCCAGATGGAAACC
genomic: AATGATCCTCATGAGGCGATTGATCGAATTGTGAGAGgttccttctt ... atttttgcagGAGTCAAATCAAAACTAGATATAGGTATGATGGAAGGCCCAGATGGAAACC