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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTCAGCCGGGATATATACAGACTTGGACAGCTTTTTGACTTTTTCAGGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATGgtaattagattttccttgcttgttattccctcattcacgaatagatgtcactttagaatgtctttagttgaacttttaaaagtttggctacctccatttt...

Basic information

species Oryza sativa
transcript LOC_Os03g02756.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02756.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G453794_T01 (Zea mays), 5'ss of exon 6
AGTGCTCAGCCGGGATATATACAGACTTGGACAGCTTTTTGACTTTTTCAGGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATGgtaattagattttccttgcttgttattccctcattcacgaatagatgtcactttagaatgtctttagttgaacttttaaaagtttggctacctccatttt
||| || ||||| || ||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| || |||||||||  ||||||||||| |||||     |   | |   | |    ||  |||  | ||  |   ||| |  ||||   |       |   |  | || 
AGTTCTTAGCCGAGACATATATAGACTCGGACAACTTTTTGACTTTTTCAGGATGTTATCCTTCTACGTGACAACTGTTGGATTCTACTTCTGTACTATGgtaatttaattttccttgcctgttaggatttgtctaatcgaaactgttccatttgtagtgattcatgttaatgttttttgaaggcacatggataaaatta

upper sequence: LOC_Os03g02756.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 43
AGTGCTCAGCCGGGATATATACAGACTTGGACAGCTTTTTGACTTTTTCAGGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATGgtaattagattttcc-ttgcttgttattccctcattcacgaatag--atgtcactttagaatgtctttagttgaacttt-taaaagtttggctacctccatttt
||| ||||| || ||| ||||||||||||| ||||||||||| || ||| ||||| |||| || ||| | |||||  |||||| |||||| || |||||||||     ||| | | |   || || ||   |  |  | |||||   |||| | |  |    | ||  |    |||     | |   | ||   | |  |    
AGTTCTCAGTCGTGATGTATACAGACTTGGGCAGCTTTTTGATTTCTTCCGGATGCTGTCTTTTTATTTTACAACAGTTGGGTACTACTTTTGTACCATGgtatgccaattatgcgtcatttatttttgtttattgaatgaataagtatgttagtgcacctagactgcaacacaacacaacagacaatgggaccctttta----

upper sequence: LOC_Os03g02756.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA10G44150.1 (Glycine max), 5'ss of exon 41
AGTGCTCAGCCGGGATATATACAGACTTGGACAGCTTTTTGACTTTTTCAGGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATGgtaattagattttccttgcttgttattccctcattcacgaatagatgtcactttagaatgtctttagttgaacttttaaaagtttggctacctccatttt--
||| |||||||| ||| ||||||||||||||||||||||||| || ||| ||||| |||| |||||| | |||||  |||| | |||||| || |||||||||     ||| | | |  ||  | ||   | ||| |  ||   |||| | |  |    | ||  |    |||     | |   |||  |||   |||    
AGTTCTCAGCCGTGATGTATACAGACTTGGACAGCTTTTTGATTTCTTCCGGATGCTGTCTTTCTATTTTACAACAGTTGGATACTACTTTTGTACCATGgtatgccaattatgcgtcatttatttttgttgattgaataa-gtatgtgagtgcacctagactacaacacaacacaacagacaatgga-acccttattacac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29615116|gb|CB620129.1|CB620129
EST:     GGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATG                         CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG
genomic: GGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATGgtaattagat ... tcttttgcagCTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG
EST: gi|300216075|gb|HO088701.1|HO088701
EST:     GGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATG                         CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG
genomic: GGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATGgtaattagat ... tcttttgcagCTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG
EST: gi|29613902|gb|CB618915.1|CB618915
EST:     GGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATG                         CTAATTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG
genomic: GGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATGgtaattagat ... tcttttgcagCTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTG
EST: gi|29675246|gb|CB671521.1|CB671521
EST:     GGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATG                         CTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTGGCT
genomic: GGATGTTGTCCTTCTATGTGACAACTATTGGGTTCTACTTCTGCACCATGgtaattagat ... tcttttgcagCTAACTGTTTGGACCGTGTACATATTTCTCTATGGGAAAACCTATCTGGCT