Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGTGGCCGTAGGGCTTCTTCAGCTGTCACCCAAGAAGATCACTCCAAGGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactgaatctgttcatccagtcaatgttcttggagaattttagtgagactagcactggaattttgtactcaactgtcccattttgccatgcag

Basic information

species Oryza sativa
transcript LOC_Os03g02590.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02590.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G029824_T04 (Zea mays), 5'ss of exon 2
TGTGGTGGCCGTAGGGCTTCTTCAGCTGTCACCCAAGAAGATCACTCCAAGGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacc-------cactgaatctgttc-atccagtcaatgttcttggag-aattttagtgagactagcactggaattttgtactcaactgtcccattttgccatgcag
 || |||||||| ||||||||||||||| | ||||||||| ||||||| || || ||||| || ||||| ||||||||||| || || |||||||||||||||         |   || ||||| |  |   |    |||| |   || |||   ||    | |   ||   ||| ||||      ||||     | |||| |||||
GGTCGTGGCCGTCGGGCTTCTTCAGCTGGCGCCCAAGAAGGTCACTCCGAGAGTGACAGGAGCCTTTGGGTTCGTCACCTCGCTTATCTCCTGCTATCAGgtatgacttctgcctcgagtctgtgctgttgtgcgtgtgttttctcagtaatggaagctgcaatgcaacgctaatgttgtgtgtgcctgt---gctctgcc-tgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88285446|gb|CI507316.1|CI507316
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88561531|gb|CI492248.1|CI492248
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88662193|gb|CI466144.1|CI466144
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88419047|gb|CI509000.1|CI509000
EST:     GATTCGTCACCTCACTCATTTCCTGCTATCAGG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATT
genomic: GATTCGTCACCTCACTCATTTCCTGCTATCA-Ggtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATT
EST: gi|88566031|gb|CI496748.1|CI496748
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|86261335|gb|CI014402.1|CI014402
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88561495|gb|CI492212.1|CI492212
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88287668|gb|CI507558.1|CI507558
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|89187844|gb|CI009828.1|CI009828
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88374020|gb|CI510838.1|CI510838
EST:     GGTAACAGGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAANTGAAGGCATGATGGATATTT
genomic: GGTAACA-GGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|157652337|gb|EX451971.1|EX451971
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|89172985|gb|CI040878.1|CI040878
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88836930|gb|CI008366.1|CI008366
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88292306|gb|CI500254.1|CI500254
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|218504458|gb|FG953020.1|FG953020
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88984635|gb|CI009411.1|CI009411
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88563366|gb|CI494083.1|CI494083
EST:     GGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88568696|gb|CI499413.1|CI499413
EST:     GGGTGACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|218490956|gb|FG953067.1|FG953067
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88561766|gb|CI492483.1|CI492483
EST:     GGTAACAGGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGTAACA-GGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88287368|gb|CI505059.1|CI505059
EST:     CGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: CGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88563692|gb|CI494409.1|CI494409
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|33664837|gb|CF295804.1|CF295804
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATTTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88663634|gb|CI484218.1|CI484218
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|89195811|gb|CI007230.1|CI007230
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|86415722|gb|CI029733.1|CI029733
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88287463|gb|CI505154.1|CI505154
EST:     TCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: TCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|15854786|gb|BI807598.1|BI807598
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|38480632|gb|CF964721.1|CF964721
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAA
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAA
EST: gi|88981185|gb|CI026937.1|CI026937
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88469112|gb|CI504832.1|CI504832
EST:     CACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: CACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88435130|gb|CI504472.1|CI504472
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|86852434|gb|CI320359.1|CI320359
EST:     GGGTAACAGGGGCATGTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88214549|gb|CI214398.1|CI214398
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88663259|gb|CI479840.1|CI479840
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88287855|gb|CI510135.1|CI510135
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88662795|gb|CI474248.1|CI474248
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88522827|gb|CI450620.1|CI450620
EST:     GGGTAACAGGGGCATTTGGATTCNTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88568027|gb|CI498744.1|CI498744
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88965198|gb|CI009234.1|CI009234
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88662642|gb|CI471498.1|CI471498
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88461768|gb|CI506844.1|CI506844
EST:     TTCGTCACCTCACTCATTTCCTGGTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: TTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88562813|gb|CI493530.1|CI493530
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88662763|gb|CI473876.1|CI473876
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|86835467|gb|CI347924.1|CI347924
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88995411|gb|CI036986.1|CI036986
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|18386960|gb|BM420158.1|BM420158
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88462251|gb|CI511916.1|CI511916
EST:     GTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88662766|gb|CI473923.1|CI473923
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88661095|gb|CI450251.1|CI450251
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATGTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88287074|gb|CI500134.1|CI500134
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|86415835|gb|CI029846.1|CI029846
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88263548|gb|CI367322.1|CI367322
EST:     GGGTAACAGGGGCATTTGGATTCTTCACCTCACTCATTTCCTGCTAGCAG                         CAACTTCCATGTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88551746|gb|CI481829.1|CI481829
EST:     GATTCTTCACCTCACTCATTTCCTGGTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|29687966|gb|CB684241.1|CB684241
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88568717|gb|CI499434.1|CI499434
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88216352|gb|CI216201.1|CI216201
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|33654938|gb|CF277552.1|CF277552
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88566240|gb|CI496957.1|CI496957
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|15858218|gb|BI811030.1|BI811030
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88985254|gb|CI006908.1|CI006908
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88418546|gb|CI504170.1|CI504170
EST:     TTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: TTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|29687965|gb|CB684240.1|CB684240
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCA
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCA
EST: gi|88215926|gb|CI215775.1|CI215775
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88662604|gb|CI470779.1|CI470779
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|11863341|gb|AT003766.1|AT003766
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88565647|gb|CI496364.1|CI496364
EST:     GGTAACAGGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGTAACA-GGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88844108|gb|CI001165.1|CI001165
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88418848|gb|CI506609.1|CI506609
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|89178535|gb|CI015240.1|CI015240
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88661305|gb|CI454156.1|CI454156
EST:     GGNTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88565729|gb|CI496446.1|CI496446
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88419154|gb|CI511306.1|CI511306
EST:     CACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: CACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88217343|gb|CI217192.1|CI217192
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88836931|gb|CI008367.1|CI008367
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88986549|gb|CI033692.1|CI033692
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88565003|gb|CI495720.1|CI495720
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88662170|gb|CI465860.1|CI465860
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88661233|gb|CI452263.1|CI452263
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88379582|gb|CI501484.1|CI501484
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|15856482|gb|BI809294.1|BI809294
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88843909|gb|CI008490.1|CI008490
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
EST: gi|88662341|gb|CI467204.1|CI467204
EST:     GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAG                         CAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT
genomic: GGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 70 (downstream exon)
Score: 86

TGTGGTGGCCGTAGGGCTTCTTCAGCTGTCACCCAAGAAGATCACTCCAAGGGTAACAGGGGCATTTGGATTCGTCACCTCACTCATTTCCTGCTATCAGgtacccactg ... tgccatgcagCAACTTCCATCTCGTGCTCCCGCTATCAAAGTGAAGGCATGATGGATATTTGCCGTTGTAGCCCAAAGGGAGTCCATCACTGGAATCTGCAGACGTAATT




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