1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCCTACTTATGTGGTGACACCAGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatatagtcttgttctagctagtgcagtcgcagtagcaaaatcgtactagtagcagtcatatgctcatcactacagagatatattactgaactctccagctttggatttttcag
species | Oryza sativa |
transcript | LOC_Os03g01014.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCAAATACT-GGCGAGAGAATCTCAAGAAACTA-TTGCAG CATGGTATGAAA-GCGGCAAATGA-GAAGATATATTCCCCTCTTCTTGAAGEST: gi|86502916|gb|CI145549.1|CI145549
genomic: TCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|87015730|gb|CI277688.1|CI277688
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: GCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|66931443|gb|CX118291.1|CX118291
genomic: GCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|86501807|gb|CI144440.1|CI144440
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|58693667|gb|CK082354.1|CK082354
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|29615143|gb|CB620156.1|CB620156
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|29684278|gb|CB680553.1|CB680553
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|29642142|gb|CB647149.1|CB647149
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|88958690|gb|CI096205.1|CI096205
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: TGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|29685648|gb|CB681923.1|CB681923
genomic: TGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|29684277|gb|CB680552.1|CB680552
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|87009421|gb|CI313894.1|CI313894
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: GGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGGAGATATATTCCCCTCTTCTTGAAGEST: gi|88977251|gb|CI024988.1|CI024988
genomic: GGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|29669725|gb|CB666000.1|CB666000
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|29668135|gb|CB664410.1|CB664410
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATATTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCTACTTATGTGGTGACACCAGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatatagtcttgttctagctagtgcagtcgcagtagcaaaatcgtactagtagcagtcatatgctcatcactacagagatatattactgaactctccagctttggatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA