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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTTGATCTCCATGCTGTGTTATGGTTAGAAACATATCTCCTGAAATGGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagtatgatgattatgatcatgtcatattatcatgaaggagctaattttgacagagcgtccttaattcatatgtagtatatttgcatgtgcatttttttccttgtcatgtaaatcacttaatgctgatagcaataaattcttag

Basic information

species Oryza sativa
transcript LOC_Os02g58020.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58020.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G013890_T01 (Zea mays), 5'ss of exon 7
TCATCTTGATCTCCATGCTGTGTTATGGTTAGAAACATATCTCCTGAAATGGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagtatgatgattatgatcatgtcatattatcatgaaggagctaattttgacagagcgtccttaattcatatgtagtatatttgca-tgtgcatttttttccttgtcatgtaaatcacttaatgctgatagcaataaattcttag
 ||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||| | |||||||||||       |     |  ||||| |||||  | | | |  |  | || ||||    |||    ||   |  | |   ||  ||||| | | |  | |   |   |    |  | ||    |||                        
CCATCTTGATCTTCATGCTGTGTTATGGCTAGAAACTTATCTCCTGAAGTGGCCAAAGACATTCATTGTTGTATCACACGCAAGGGAGTTTTTGAATACGgtatg------aacacccaatatcatttcataggagc-taattggacaaaatttgcactagcacatttttcttttcttgtgtggatttgaagtttatagtggatatttgacaacctgaactttttag-----------------------

upper sequence: LOC_Os02g58020.2 (Oryza sativa), 5'ss of exon 7
lower sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 7
TCATCTTGATCTCCATGCTGTGTTATGGTTAGAAACATATCTCCTGAAATGGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagtatgatgattatgatcatgtcatattatcatgaaggagctaattttgacagagcgtccttaattcatatgtagtatatttgcatgtgcatttttttccttgtcatgtaaatcacttaatgctgatagcaataaattcttag
 |||||||||||||||||||| ||||||||||||||||||||   ||| |||||||| ||||| || || || || ||||||||||| ||  | || ||||||     | |  |  |  |||||   |   |   | ||       | ||| |   | ||   |   |||  |||||||    |  |||||                                                          
CCATCTTGATCTCCATGCTGTCTTATGGTTAGAAACATATCTAACGAAGTGGCCAAAAACATTTATAGTCGTTTCCCATGCTAGGGAATTCTTGAACACGgtacatttttttctc-tagtgatctccttgca--gttattgtttccccaatatctccgga-tatgtgtaaaccatatgt---ttggttgcag---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218482666|gb|FG970229.1|FG970229
EST:     GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
genomic: GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
EST: gi|27576082|gb|CA998776.1|CA998776
EST:     GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTACTACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
genomic: GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
EST: gi|29662747|gb|CB659022.1|CB659022
EST:     GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
genomic: GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
EST: gi|3766930|gb|AU031040.1|AU031040
EST:     TGTATCACATGCTAGGGAGTTTCTTAATACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
genomic: TGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
EST: gi|29644366|gb|CB649373.1|CB649373
EST:     GGCCAAAGACATTCATTGTTGTATCACATGCTANGGAGTTTCTTAATACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACA
genomic: GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACA
EST: gi|24468674|gb|CA305623.1|CA305623
EST:     GGCCAAAGACATTCATTGTTGCATCACATGCTAGGGAGTTTCTTAATACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
genomic: GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
EST: gi|218483226|gb|FG956166.1|FG956166
EST:     GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
genomic: GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
EST: gi|86909957|gb|CI292894.1|CI292894
EST:     TGTATCACATGCTAGGGAGTTTCTTAATACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
genomic: TGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
EST: gi|58602069|gb|CK012597.1|CK012597
EST:     GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACG                         GTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA
genomic: GGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagta ... aaattcttagGTCGTCACCGACATTCTTCATCTGCATGGACAAAAGCTACATGCTTACAAA