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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttgtttcttaagtctgaatatttgcaaactgtaaaccattcattgtcatcgttatgatgatttggcacaaaatggttttgaattca...

Basic information

species Oryza sativa
transcript LOC_Os02g56000.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 7
TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttg--tttcttaagtctgaatatttgcaaactgtaaaccattcattgt-catcgttatgatgatttggcacaaaatggttttgaat--tca------------------------------------------------------------------------------------------
||||||||||||||| |||||||||||  | ||||||||||| |||||||| ||||| |||||||| || || || |||||||||||||||||||||     |      | |||  | | |   | |  |  || |    ||    |||| ||     | | |||   || | ||| |    |  | |  |||                                                                                          
TGAAGTTAGTGGTGATAGAGAAGTGCAAAGGACAATGTTGGAATTGCTGAACCAGCTTGATGGATTTAGCAGCGATGAGAGGATAAAGgtcagcattcaacctcaaacctattagttattacagtcttgatgctttgtctcaggttttgttcagttgcaggttgagaaggtataaagttacctctattgatcatgatatgagagatagatgaactgatattttttcccaatgtcttatttaatatctggtgtactaaacgtttgattgttgtgtggcttacag

upper sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 7
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 7
TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttgtttcttaagtctgaatatttgcaaactgtaaaccattcattgtcatcgttatgatgatttggcacaaaatggttttgaattca-
|||||| || || ||||| ||||||||| | || |||||||||||||| ||||| || || ||||||||||| || ||  | || ||||| ||  | |||||   || || | | || |  ||   |      ||||  | || || |||  |  |   | |     |   |  |   | |   |||| 
TGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCAATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGgtgagtgtctttatccatt-ctaaggactaatcat--actggtcttaaa--aatcgttctcaaagaaacagtaa--caaccatacctttctattttttcag

upper sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 8
TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttgtttcttaagtctgaatatttgcaaactgtaaaccattcattgtcatcgttatgatgatttggcacaaaatggttttgaattca-------------
||| || ||||| || |||||||||||||| ||||||||||| ||||| |||||||| ||||| || |||||||| ||  | |||||||| |    || |     ||| |        ||||   ||   |  |  |||||    |     |  ||| ||  ||   || ||  | || |||   |||             
TGAGGTGAGTGGAGATAGAGAAGTGCAGCGAACAATGTTGGAATTGCTCAATCAGCTTGATGGTTTTAGTAGTGATGACCGTATAAAGgtaatgtattctgaccattttt--------aata---gcgggcactggaccatgtgctcctggctatataatacttc--cataatgtagtattgggctcacttgcaacgctgt

upper sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 7
TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttgtttcttaagtctgaatatttgcaaactgtaaaccattcattgtcatcgttatgatgatt-tggcacaaaatggttttgaattca
|||||| ||||| || || || |||||||| ||||||||||||||  |||||||||| ||||| || || ||||| ||  | ||||||||     | |||  |   ||| | | |  |  | ||| ||     |   |        |||  | | |      || ||    |   || | |  | | | 
TGAAGTGAGTGGAGATAGGGAGGTGCAGCGGACAATGTTGGAGTTATTGAATCAGCTTGATGGCTTTAGCAGTGATGATCGCATAAAGgttttattgttttctaaattcattactgcgcttttttccacctcattttctggctcaagtccccatgaattcatttgtgttggattctgctatccactgc-

upper sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 7
lower sequence: PP1S340_7V6.1 (Physcomitrella patens), 5'ss of exon 7
TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttgtttcttaagtctgaatatttgcaaactgtaaaccattcattgtcatcgt-tatgatgatttggcacaaaatggttttgaattca-----------------------------------------------------------------------
|||||| ||||| ||  | ||||||||| | || ||| |||||||||| |||||||| ||||||||||| ||||| ||| | || || || ||| ||   || |  || |||  |||  || | | || |   | |    |  | ||   |  | | || |  | |   |  |       ||||| ||                                                                        
TGAAGTAAGTGGAGATCGTGAAGTGCAGAGAACTATGCTGGAGTTGCTTAATCAGCTGGATGGATTCAGCAGTGATGAGCGCATTAAAgtgagccttgaaatatcattattatttctccat-tcttcacataatgatttctcaaatgctctattatttgcttgtctataatcagtcaaggttgaagtcctagtcgtgggtgtagccgtgcgggctgaggaggaaattttaggaactaattcttgaatgtttcatgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86545689|gb|CI185895.1|CI185895
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86415267|gb|CI069670.1|CI069670
EST:     TGGAGTTGCTGAATCAGCCAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29660288|gb|CB656563.1|CB656563
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88832202|gb|CI017436.1|CI017436
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86497811|gb|CI140444.1|CI140444
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88844827|gb|CI022181.1|CI022181
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|89168359|gb|CI109563.1|CI109563
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29682547|gb|CB678822.1|CB678822
EST:     TGGAGTTGTTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88967851|gb|CI098093.1|CI098093
EST:     AGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: AGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86415268|gb|CI069671.1|CI069671
EST:     TGGAGTTGCTGAATCAGCCAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|87031011|gb|CI270159.1|CI270159
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86890008|gb|CI319997.1|CI319997
EST:     T-GAGTTGCT-AATCAGCTAGAT-GATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|89183716|gb|CI046281.1|CI046281
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|89186657|gb|CI114366.1|CI114366
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|89164849|gb|CI101937.1|CI101937
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88828977|gb|CI073847.1|CI073847
EST:     TGGAGTTGCTGAATAAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|8859408|gb|AU096726.1|AU096726
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|89198421|gb|CI007481.1|CI007481
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86424028|gb|CI062789.1|CI062789
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29626138|gb|CB631149.1|CB631149
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86413371|gb|CI067776.1|CI067776
EST:     CTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: CTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86432781|gb|CI086392.1|CI086392
EST:     GGAGTCTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: GGAGT-TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|8527269|gb|AU092084.1|AU092084
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29661398|gb|CB657673.1|CB657673
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88906488|gb|CI375560.1|CI375560
EST:     GGAGTTGCT-AATCAGCTAAATGG-TTCAGTACTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: GGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86523662|gb|CI163868.1|CI163868
EST:     CTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: CTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86413599|gb|CI019184.1|CI019184
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|94362567|gb|CI052686.1|CI052686
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88250010|gb|CI249859.1|CI249859
EST:     TAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|22304809|gb|BQ906031.1|BQ906031
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88849565|gb|CI089473.1|CI089473
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29659490|gb|CB655765.1|CB655765
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86858935|gb|CI275141.1|CI275141
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86490885|gb|CI133518.1|CI133518
EST:     GGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGT
genomic: GGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86414336|gb|CI068739.1|CI068739
EST:     NGGAGTTGCTGAATNAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86425390|gb|CI070487.1|CI070487
EST:     CGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: CGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88971395|gb|CI017709.1|CI017709
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88980148|gb|CI026437.1|CI026437
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86413980|gb|CI068187.1|CI068187
EST:     TGGAGTTGCTGAATCAGCCAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88221331|gb|CI221287.1|CI221287
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29615761|gb|CB620773.1|CB620773
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88906424|gb|CI375496.1|CI375496
EST:     TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86490630|gb|CI133263.1|CI133263
EST:     GCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: GCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86420002|gb|CI054803.1|CI054803
EST:     TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|11173135|gb|AU164630.1|AU164630
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29615719|gb|CB620731.1|CB620731
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86593962|gb|CI260191.1|CI260191
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|218495770|gb|FG962501.1|FG962501
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88833193|gb|CI076676.1|CI076676
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29683382|gb|CB679657.1|CB679657
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|88833497|gb|CI076978.1|CI076978
EST:     TGGAGTTGCTGAATGAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29682519|gb|CB678794.1|CB678794
EST:     TGGAGTTGTTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|87018818|gb|CI256703.1|CI256703
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|86823621|gb|CI258693.1|CI258693
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29615715|gb|CB620727.1|CB620727
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|89185134|gb|CI049680.1|CI049680
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|89197922|gb|CI117400.1|CI117400
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29684874|gb|CB681149.1|CB681149
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|33815577|gb|CF333641.1|CF333641
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
EST: gi|29615721|gb|CB620733.1|CB620733
EST:     TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAG                         GTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG
genomic: TGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcattt ... tggactacagGTGATAGCTGCAACTAATCGCGCGGACATTCTTGATCCTGCTTTGATGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAAGTTAGTGGTGACAGAGAAGTGCAGCGCACAATGTTGGAGTTGCTGAATCAGCTAGATGGATTCAGTAGTGACGAGAGGATAAAGgtcagcatttttatttgtttcttaagtctgaatatttgcaaactgtaaaccattcattgtcatcgttatgatgatttggcacaaaatggttttgaattca

- - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT