1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTTGGGAACGAAAGCATGGCAGTTGAGGGTTTTGAGGAAGCAATTAAATGCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctactacttatccttgtgtactgcctttcatccatgcgctcctatttgtggtgctcttgactgacttttatcatgtactgtgctacttttgcag
species | Oryza sativa |
transcript | LOC_Os02g55200.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|29657742|gb|CB654017.1|CB654017
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|89189931|gb|CI049470.1|CI049470
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACCAAAACAACTGGATGACAAGTGATATEST: gi|88829494|gb|CI074364.1|CI074364
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|87008607|gb|CI315065.1|CI315065
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: CCTTGAGAA-TTGAAGCCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|86259820|gb|CI065693.1|CI065693
genomic: CCTTGAGAATTTGAAG-CTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: CTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|88902604|gb|CI088142.1|CI088142
genomic: CTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTTTACAAAAACAACTGGATGACAAGTGATATEST: gi|86597624|gb|CI274615.1|CI274615
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|88219081|gb|CI220354.1|CI220354
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: AAGCTGGAATCTGGAGAGCCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|86872668|gb|CI329622.1|CI329622
genomic: AAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GAATTTGAAGCT-GAATCTGGAGAGGCCACTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGAAAAEST: gi|58589478|gb|CF987786.1|CF987786
genomic: GAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|88990288|gb|CI107714.1|CI107714
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGCCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACGAAAACAACTGGATGACAAGTGATATEST: gi|16579745|gb|BI813840.1|BI813840
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: CTGGAATCTGGAGAGCCCAGTCTTGA-CAGCGG CGTCTCTCGGTTCTCGACTTTCTACCAAAACAACTGGATGACAAGTGATATEST: gi|29659820|gb|CB656095.1|CB656095
genomic: CTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|88219655|gb|CI219215.1|CI219215
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|9865344|gb|AU101094.1|AU101094
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATATEST: gi|86842452|gb|CI335325.1|CI335325
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCACCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAACTGGATGACAAGTGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGGGAACGAAAGCATGGCAGTTGAGGGTTTTGAGGAAGCAATTAAATGCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctactacttatccttgtgtactgcctttcatccatgcgctcctatttgtggtgctcttgactgacttttatcatgtactgtgctacttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG