1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAAgtaaattaccatttaaccttttcaatttaggaggcagtacaatgttgctgtgcttttatgctcactacattaataatctggcctgtttatgcatctcag
species | Oryza sativa |
transcript | LOC_Os02g54580.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAA TTGCAGTTAACACCAAGTGATAAAAAGTATCCACATAEST: gi|29672624|gb|CB668899.1|CB668899
genomic: TAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAAgtaaattacc ... tgcatctcagTTGCAGTTAACACCAAGTGATAAAAAGTATCCACATA
EST: TAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAA TTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGACEST: gi|29629784|gb|CB634793.1|CB634793
genomic: TAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAAgtaaattacc ... tgcatctcagTTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGAC
EST: TAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAA TTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGAC
genomic: TAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAAgtaaattacc ... tgcatctcagTTGCAGTTAACACCAAGTGATAAAAAGTATCCACATATTATCCATGTTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATAGTTGGCTGGAGAACATCATCAATTCGGCGTCAGCACGAATTACCTAAAgtaaattaccatttaaccttttcaatttaggaggcagtacaatgttgctgtgcttttatgctcactacattaataatctggcctgtttatgcatctcag
- - - - GCTGGA
- - - - - TGGAGA
- - - - - - GGAGAA