1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGTGAAGCAGCACACTTTGGTGTCTGGCGGTGTTAGAGGAACCTTACCATGGATGGCACCAGAGCTTCTGAGTGGGAAAAGCAATATGGTGTCAGAGAAGgtaagaacactggctttataaattataagcacccttatggatcataagtcattaaaactaatgttcttcattttttatattccaactgaaactgatatggcgcttacttgtag
species | Oryza sativa |
transcript | LOC_Os02g54510.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGTGGGAAAAGCAATATGGTGTCAGAGAAG ATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAAEST: gi|29677569|gb|CB673844.1|CB673844
genomic: AGTGGGAAAAGCAATATGGTGTCAGAGAAGgtaagaacac ... ttacttgtagATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAA
EST: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGCAATATGGTGTCAGAGAAG ATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAAEST: gi|29623880|gb|CB628891.1|CB628891
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGCAATATGGTGTCAGAGAAGgtaagaacac ... ttacttgtagATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAA
EST: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGCAATATGGTGTCAGAGAAG ATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAAEST: gi|396941216|gb|HO188425.1|HO188425
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGCAATATGGTGTCAGAGAAGgtaagaacac ... ttacttgtagATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAA
EST: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGCAATATGGTGTCAGAGAAG ATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAAEST: gi|29624045|gb|CB629056.1|CB629056
genomic: GGATGGCACCAGAGCTTCTGAGTGGGAAAAGCAATATGGTGTCAGAGAAGgtaagaacac ... ttacttgtagATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAA
EST: TATGGTGTCAGAGAAG ATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAA
genomic: TATGGTGTCAGAGAAGgtaagaacac ... ttacttgtagATTGATGTATACTCGTTTGGTATTGTGATGTGGGAGCTGCTTACTGGCGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAAGCAGCACACTTTGGTGTCTGGCGGTGTTAGAGGAACCTTACCATGGATGGCACCAGAGCTTCTGAGTGGGAAAAGCAATATGGTGTCAGAGAAGgtaagaacactggctttataaattataagcacccttatggatcataagtcattaaaactaatgttcttcattttttatattccaactgaaactgatatggcgcttacttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA