1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGTTTGTGGTTAAGGTAGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctcccttttttcgtccttattgtcattgtctgttcccttgttgtagatattttgaaacatcagataccggaactgattgctttagttgacttc...
species | Oryza sativa |
transcript | LOC_Os02g53060.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|86496862|gb|CI139495.1|CI139495
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88482025|gb|CI419296.1|CI419296
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCCTGGAGACAAACTACAEST: gi|8527814|gb|AU092629.1|AU092629
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCA-CCCTGGAGACAAACTACA
EST: TTGCTATANCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCNCCCTGGAGACAAACTACAAEST: gi|88470046|gb|CI407317.1|CI407317
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88503126|gb|CI430632.1|CI430632
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88514156|gb|CI441662.1|CI441662
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|86535862|gb|CI176068.1|CI176068
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88271757|gb|CI387810.1|CI387810
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCAGCCCTGGAGACAAACTACAEST: gi|88961062|gb|CI096465.1|CI096465
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCA-CCCTGGAGACAAACTACA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|218488196|gb|FG970072.1|FG970072
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|11233281|gb|AU164713.1|AU164713
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88320707|gb|CI525649.1|CI525649
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACCCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|25799545|gb|CA755506.1|CA755506
genomic: TGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACCCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88517598|gb|CI445252.1|CI445252
genomic: TGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|87028372|gb|CI263714.1|CI263714
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88503321|gb|CI430827.1|CI430827
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88671264|gb|CI723184.1|CI723184
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|218498714|gb|FG963991.1|FG963991
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATT-CACCCTGGAGACAAACTACAAEST: gi|88974504|gb|CI022045.1|CI022045
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|86513098|gb|CI155731.1|CI155731
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|86533509|gb|CI173715.1|CI173715
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88318949|gb|CI510744.1|CI510744
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCAGCCCTGGAGACAAACTACAEST: gi|88677292|gb|CI729950.1|CI729950
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCA-CCCTGGAGACAAACTACA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88379765|gb|CI503964.1|CI503964
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88551157|gb|CI481189.1|CI481189
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|16754672|gb|BM039051.1|BM039051
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TGCGTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88261543|gb|CI365119.1|CI365119
genomic: TGC-TATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TGCTATAGCCCGTGATGGTGGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88965355|gb|CI011606.1|CI011606
genomic: TGCTATAGCCCGTGATGGT-GCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88829940|gb|CI004978.1|CI004978
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88281960|gb|CI403356.1|CI403356
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88242742|gb|CI242591.1|CI242591
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|86491932|gb|CI134565.1|CI134565
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88846360|gb|CI373128.1|CI373128
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|66919202|gb|CX106050.1|CX106050
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TGCTATAGCCCTGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|86595130|gb|CI260369.1|CI260369
genomic: TGCTATAGCCC-GTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88261592|gb|CI365168.1|CI365168
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCGTGAT-GTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAACGCAGATTGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|88997224|gb|CI389890.1|CI389890
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TTGCTATAGCCCCTGATGGTGCTAGTGGAGGGTTTGTTCCTACCGTCACT ATAAACCCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAAEST: gi|3761046|gb|C98300.1|C98300
genomic: TTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagATAAACGCAGATGGTGTTTCGAGGAAATTTCACCCTGGAGACAAACTACAA
EST: TGCTATAGCCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACT ATAAAACGCAGATGGTGTTTCCGAGGAAATTTCACCCTGGAGACAAACTAC
genomic: TGCTATAG-CCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctc ... aatcttgcagAT-AAACGCAGATGGTGTTT-CGAGGAAATTTCACCCTGGAGACAAACTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTTGTGGTTAAGGTAGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACCGTCACTgtaagtgctcccttttttcgtccttattgtcattgtctgttcccttgttgtagatattttgaaacatcagataccggaactgattgctttagttgacttc
- - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG