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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACAGCTCTTCAAGCCCTTGAATCTTCATTTTGGGAAAAGATGGTTTGTAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttgatgctttcctcatactgttagaacttttatcatctatcggcccctctaacttgagttctgtgctaaaattactccatctgtttttctttctggatttcccag

Basic information

species Oryza sativa
transcript LOC_Os02g49800.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86527619|gb|CI167825.1|CI167825
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29658893|gb|CB655168.1|CB655168
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88216608|gb|CI214708.1|CI214708
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88336317|gb|CI648904.1|CI648904
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29642626|gb|CB647633.1|CB647633
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|58691661|gb|CK080348.1|CK080348
EST:     ATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATTGATCAT
genomic: ATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89173768|gb|CI041661.1|CI041661
EST:     TAATGCCCAGAACATTCACCAGTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88955888|gb|CI092176.1|CI092176
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29645619|gb|CB650626.1|CB650626
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|94362337|gb|CI052317.1|CI052317
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|15008459|gb|AU222847.1|AU222847
EST:     TTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29633919|gb|CB638928.1|CB638928
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29675851|gb|CB672126.1|CB672126
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|66916872|gb|CX103720.1|CX103720
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATTGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88269671|gb|CI380969.1|CI380969
EST:     TGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29618914|gb|CB623926.1|CB623926
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATTGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|86858875|gb|CI275099.1|CI275099
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89186040|gb|CI047909.1|CI047909
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89173276|gb|CI041169.1|CI041169
EST:     TTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89185153|gb|CI050887.1|CI050887
EST:     AATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: AATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|86504446|gb|CI147079.1|CI147079
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89195473|gb|CI051586.1|CI051586
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|27576286|gb|CA998980.1|CA998980
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|86859086|gb|CI277012.1|CI277012
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88271379|gb|CI387432.1|CI387432
EST:     ATAATTACTTGGTCATTAGT                         GATAAAGGCAATTTCTGCCTGGGATTCCTCAAT-GAAAGGACATCGATCAT
genomic: ATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|87015957|gb|CI279709.1|CI279709
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29631316|gb|CB636325.1|CB636325
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89192890|gb|CI050188.1|CI050188
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88958575|gb|CI096091.1|CI096091
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88262784|gb|CI366558.1|CI366558
EST:     AATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCAGTTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCA
genomic: AATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCA-TTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCA
EST: gi|29669338|gb|CB665613.1|CB665613
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|27577711|gb|CB000406.1|CB000406
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88964604|gb|CI069952.1|CI069952
EST:     CATTCACCATTCTTCCTGATAATTACTTGATCATCAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: CATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|86430051|gb|CI082474.1|CI082474
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88848570|gb|CI087092.1|CI087092
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|313081067|gb|HO213653.1|HO213653
EST:     ATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATTGATCAT
genomic: ATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|86535116|gb|CI175322.1|CI175322
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|86434961|gb|CI106194.1|CI106194
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89189608|gb|CI049147.1|CI049147
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88962063|gb|CI097216.1|CI097216
EST:     TAATGCCCAGGACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29664922|gb|CB661197.1|CB661197
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29664382|gb|CB660657.1|CB660657
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|9864998|gb|AU100748.1|AU100748
EST:     CCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: CCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88572028|gb|CI663599.1|CI663599
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89180240|gb|CI044519.1|CI044519
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|89176218|gb|CI043239.1|CI043239
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88955592|gb|CI091881.1|CI091881
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88311161|gb|CI658074.1|CI658074
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|86883282|gb|CI337943.1|CI337943
EST:     GCCCAGAACATTCACCATTGTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: GCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88264789|gb|CI368563.1|CI368563
EST:     TAATGCCCAGAACATTCACCAGTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88257902|gb|CI360488.1|CI360488
EST:     CATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: CATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|109712466|gb|CI105074.1|CI105074
EST:     CATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: CATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|86836629|gb|CI347281.1|CI347281
EST:     TTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88990691|gb|CI108078.1|CI108078
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|29644454|gb|CB649461.1|CB649461
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|25806578|gb|CA762539.1|CA762539
EST:     TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATTGATCAT
genomic: TAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
EST: gi|88978617|gb|CI384958.1|CI384958
EST:     CTTGATCATTACT                         GATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT
genomic: CTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 121

CAAACAGCTCTTCAAGCCCTTGAATCTTCATTTTGGGAAAAGATGGTTTGTAATGCCCAGAACATTCACCATTCTTCCTGATAATTACTTGATCATTAGTgtaagttttg ... gatttcccagGATAAAGGCAATGTCTGCCTGGGATTCCTCAATGGAAAGGACATCGATCATGGGTCAACAGTAATAGTCGGAG




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